PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV89047.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 464aa MW: 52303.5 Da PI: 6.8302

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV89047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	33	86	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+e Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k RWV89047.1 33 KKRRLTADQVEFLEKNFEVENKLEPERKLQLAKDLGLKPRQVAIWFQNRRARWK 86 56689************************************************9 PP
2	HD-ZIP_I/II	127	8.3e-41	33	123	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+++qv++LE++Fe e+kLeperK +la++Lgl+prqva+WFqnrRAR+k+kqlEk ye+Lk++yd+lk ++++L ke+e+L++el+ RWV89047.1 33 KKRRLTADQVEFLEKNFEVENKLEPERKLQLAKDLGLKPRQVAIWFQNRRARWKAKQLEKGYESLKSSYDSLKLDHDNLVKENEKLQAELQ 123 9**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MVNSDGTHGN SLNFGLEETA DDDFDEYPQR PGKKRRLTAD QVEFLEKNFE VENKLEPERK 60 LQLAKDLGLK PRQVAIWFQN RRARWKAKQL EKGYESLKSS YDSLKLDHDN LVKENEKLQA 120 ELQPGLDAQV MLCKQEDFSS ANSAALESES PQNADDGGYS TRSQKKKKSI GFTMEYRPQF 180 FFFSSLLFFL ASAAFTSAHI ADYDEYWQKK AELARSHANN AYNPNPESVT KHFNEAVMRC 240 AAELETNSTR RGLRGKLRNQ EDSCLATNPI DRCFRCLPNW VHHRKKLATC AKGFGRHATG 300 GKNGDFYVVT DSSDDDLVNP RNGTLRHAVI QDRPLWIVFA RDMLIRLTEE LIINSNKTID 360 GRGANVQIAN GAGLTLQFVH NVIIHNIRIH DIKAGNGGMI RDSEEHYGLR TRSDGDGISI 420 FGASNIWIDH VSMSNCMDGL IDAIEGSTAI TISNCHFTQH NDVG

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MVNSDGTHGN SLNFGLEETA DDDFDEYPQR PGKKRRLTAD QVEFLEKNFE VENKLEPERK  60
LQLAKDLGLK PRQVAIWFQN RRARWKAKQL EKGYESLKSS YDSLKLDHDN LVKENEKLQA  120
ELQPGLDAQV MLCKQEDFSS ANSAALESES PQNADDGGYS TRSQKKKKSI GFTMEYRPQF  180
FFFSSLLFFL ASAAFTSAHI ADYDEYWQKK AELARSHANN AYNPNPESVT KHFNEAVMRC  240
AAELETNSTR RGLRGKLRNQ EDSCLATNPI DRCFRCLPNW VHHRKKLATC AKGFGRHATG  300
GKNGDFYVVT DSSDDDLVNP RNGTLRHAVI QDRPLWIVFA RDMLIRLTEE LIINSNKTID  360
GRGANVQIAN GAGLTLQFVH NVIIHNIRIH DIKAGNGGMI RDSEEHYGLR TRSDGDGISI  420
FGASNIWIDH VSMSNCMDGL IDAIEGSTAI TISNCHFTQH NDVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-33	HD-ZIP family protein