PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV89736.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 600aa MW: 65515.4 Da PI: 9.8532

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV89736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWV89736.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MKVVEHKTPS LTTGTGEVTA VSSSQQQSSF ASPNPLPAKK KRGPAGNPGL SITASSPEAE 60 VVALSPKSLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WRLKQRTSKE ARKKVYVCPE 120 LSCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDCKAHS KICGTREYKC 180 DCGTLFTRAF CDALAEENAR VTTGNLVGDA HQLLLPQPAS SAHQHSILPN TTSVTTTSTT 240 TSSSCHLEFS VKGEEQDPYP NMKPWQPAKI HGLPSICSTF LEPVFPYKNP QSPYLSSPPT 300 LTSSLHLSAT ALLQKAAQAG ATMSRTKINM QMAADAPTTT GIGLCLSSHG GMRYGGGSSS 360 QGLGPAVTFL QATAPGGSSE GFFNGMLASK RRETDGSDRL KGSHYRDEEF ARETLCNNFV 420 WVGGWVVLSG SDEAGARRRL ARRGDEGERW EGDGWTRGTT HSGSRSSPSS MIGSCRYFSL 480 SLPFSPSSSS FSFYYLLSPL FGVMVKRRTK MTLGSKNDGN IHGYEKIYLA FLLLHKPRCR 540 GLFALQLEQA TYKNRQQLYL PEQVTVTLQT ESSVPNTLVI ANCKVVKPRV AAVEHISQVT

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MKVVEHKTPS LTTGTGEVTA VSSSQQQSSF ASPNPLPAKK KRGPAGNPGL SITASSPEAE  60
VVALSPKSLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WRLKQRTSKE ARKKVYVCPE  120
LSCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDCKAHS KICGTREYKC  180
DCGTLFTRAF CDALAEENAR VTTGNLVGDA HQLLLPQPAS SAHQHSILPN TTSVTTTSTT  240
TSSSCHLEFS VKGEEQDPYP NMKPWQPAKI HGLPSICSTF LEPVFPYKNP QSPYLSSPPT  300
LTSSLHLSAT ALLQKAAQAG ATMSRTKINM QMAADAPTTT GIGLCLSSHG GMRYGGGSSS  360
QGLGPAVTFL QATAPGGSSE GFFNGMLASK RRETDGSDRL KGSHYRDEEF ARETLCNNFV  420
WVGGWVVLSG SDEAGARRRL ARRGDEGERW EGDGWTRGTT HSGSRSSPSS MIGSCRYFSL  480
SLPFSPSSSS FSFYYLLSPL FGVMVKRRTK MTLGSKNDGN IHGYEKIYLA FLLLHKPRCR  540
GLFALQLEQA TYKNRQQLYL PEQVTVTLQT ESSVPNTLVI ANCKVVKPRV AAVEHISQVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	114	RLKQRTSKEARKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	3e-83	C2H2 family protein