PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV92464.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 373aa MW: 41684.6 Da PI: 8.0842

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV92464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.8	4.2e-09	2	21	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ff +tGtCk+G++Ck++H++ RWV92464.1 2 FFIKTGTCKFGSTCKYHHPQ 21 899***************97 PP
2	zf-CCCH	38	2.7e-12	43	66	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtGtCk+G CkF+H++ RWV92464.1 43 KSCPYYMRTGTCKFGVVCKFNHPQ 66 56********************97 PP
3	zf-CCCH	27.7	4.7e-09	181	206	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ rtG C+yG++Ck++H++ RWV92464.1 181 DQPECQYYIRTGCCRYGSSCKYHHPK 206 689*********************96 PP
4	zf-CCCH	34.3	4.1e-11	225	250	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f+a +G CkyG+ CkF H+ RWV92464.1 225 PGEPACTFYATYGSCKYGAACKFDHP 250 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
QFFIKTGTCK FGSTCKYHHP QDKHDAQVLQ LNVLSLPLRK DEKSCPYYMR TGTCKFGVVC 60 KFNHPQPANV GAMFPESGLP INAYYGSFAP STGPSLTGEL PPWPVSRTTM SSPRMQGLQA 120 FMPLIQPHSQ ATMPMQQDWS TYMGSIHIPS YSSSRRNHLS NLNNHGQPGS TAPVNFPHRP 180 DQPECQYYIR TGCCRYGSSC KYHHPKERNP AAACTIGPFG LPLRPGEPAC TFYATYGSCK 240 YGAACKFDHP YVAMFPLMEQ PLAYPYQRGS ECTRMTLDNP SCWMPKAPDE LMKPERIGEL 300 QDLDDIEHDD PSTPTSPSHT PPHSESSSIN QSDHFKKKVR IVLDDNHVCK LIVLCFGLGR 360 MLLPIVLSYI ACV

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

QFFIKTGTCK FGSTCKYHHP QDKHDAQVLQ LNVLSLPLRK DEKSCPYYMR TGTCKFGVVC  60
KFNHPQPANV GAMFPESGLP INAYYGSFAP STGPSLTGEL PPWPVSRTTM SSPRMQGLQA  120
FMPLIQPHSQ ATMPMQQDWS TYMGSIHIPS YSSSRRNHLS NLNNHGQPGS TAPVNFPHRP  180
DQPECQYYIR TGCCRYGSSC KYHHPKERNP AAACTIGPFG LPLRPGEPAC TFYATYGSCK  240
YGAACKFDHP YVAMFPLMEQ PLAYPYQRGS ECTRMTLDNP SCWMPKAPDE LMKPERIGEL  300
QDLDDIEHDD PSTPTSPSHT PPHSESSSIN QSDHFKKKVR IVLDDNHVCK LIVLCFGLGR  360
MLLPIVLSYI ACV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-58	C3H family protein