PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV93953.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

Trihelix

Protein Properties

Length: 648aa MW: 70651.5 Da PI: 7.9591

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV93953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	6e-15	23	74	34	87
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 v +k++e g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea RWV93953.1 23 VDRKLAELGYKRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRFFSQLEA 74 567899*****************************866665..*****85 PP
2	trihelix	104.4	8.3e-33	372	456	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+ +e++++++ k+plWee+s++m++ g++r +k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+ RWV93953.1 372 RWPKAEVHALIKIRSALESKFQEAGPKGPLWEEISARMQQLGYNRRAKRCKEKWENINKYFKKVKESDKIR-PEDSKTCPYFHQLD 456 8******************************************************************87.9*********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MGSFFTLLAS SAAAFAYNCG HLVDRKLAEL GYKRSAKKCK EKFENVHKYY KRTKDGRAGR 60 QDGKSYRFFS QLEALHSGSA AVAASSAFSA AMAGPPPGRA QPISAVAPPT MAMPTRAVMP 120 EITPPLGGLQ GISSLASGGC RAAAAAMGIS FSSNSSSSSS SESDEETEEA GERQEGRKRK 180 HSGRGSGTSR KMMAFFDRLM KQVMERQEVM QQRFLEAIEK REQDRMIRDE AWRRQEMARL 240 NREQEVLAQE RAMAASRDTA IISYLQTISG QTFPVPAMPA TPISIVPLPP QQSSHAPPPQ 300 PAAPQQQLHP PPLQQQKPVK PSPQKHEIQR HLQSSEIAHH QPSSATESVP GSEPQDAVGR 360 ASLQEAMSSS SRWPKAEVHA LIKIRSALES KFQEAGPKGP LWEEISARMQ QLGYNRRAKR 420 CKEKWENINK YFKKVKESDK IRPEDSKTCP YFHQLDTLYR SRLLGSSSAS GSSSNAGIQR 480 QQGHETNPAS SQQQGNALTI MPQQKAPPPP PQPPQQQQQP ATEAESNNGK SSSDNDQNGG 540 NSEGGGGPGG TEVQTSNGEL SPSFFDVGLK KLMGEPPQQS VMDDYDKLDE ADSVNLDQDD 600 DEEDDDDDDE ARKMQYKIQF QRQNVSAGSG GNESAAAATA GSFLAIVR

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MGSFFTLLAS SAAAFAYNCG HLVDRKLAEL GYKRSAKKCK EKFENVHKYY KRTKDGRAGR  60
QDGKSYRFFS QLEALHSGSA AVAASSAFSA AMAGPPPGRA QPISAVAPPT MAMPTRAVMP  120
EITPPLGGLQ GISSLASGGC RAAAAAMGIS FSSNSSSSSS SESDEETEEA GERQEGRKRK  180
HSGRGSGTSR KMMAFFDRLM KQVMERQEVM QQRFLEAIEK REQDRMIRDE AWRRQEMARL  240
NREQEVLAQE RAMAASRDTA IISYLQTISG QTFPVPAMPA TPISIVPLPP QQSSHAPPPQ  300
PAAPQQQLHP PPLQQQKPVK PSPQKHEIQR HLQSSEIAHH QPSSATESVP GSEPQDAVGR  360
ASLQEAMSSS SRWPKAEVHA LIKIRSALES KFQEAGPKGP LWEEISARMQ QLGYNRRAKR  420
CKEKWENINK YFKKVKESDK IRPEDSKTCP YFHQLDTLYR SRLLGSSSAS GSSSNAGIQR  480
QQGHETNPAS SQQQGNALTI MPQQKAPPPP PQPPQQQQQP ATEAESNNGK SSSDNDQNGG  540
NSEGGGGPGG TEVQTSNGEL SPSFFDVGLK KLMGEPPQQS VMDDYDKLDE ADSVNLDQDD  600
DEEDDDDDDE ARKMQYKIQF QRQNVSAGSG GNESAAAATA GSFLAIVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-46	Trihelix family protein