PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV96900.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 676aa MW: 72926.3 Da PI: 9.5801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV96900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RWV96900.1 122 FICEVCNKGFQREQNLQLHRRGH 144 89*******************88 PP
2	zf-C2H2	16.9	1.7e-05	198	220	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+Lk H +t+ RWV96900.1 198 WKCDKCSKRYAVQSDLKAHAKTC 220 58******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MASASSSSHF LGGIRDKELQ KQMKQQHQQH QQQQQQQQQQ QQQQSSSMAP APAAASDRKR 60 RNQPGNPSKY LKHSNMQNMQ EKQLIQAYLP SLSQPNPHVS AADPDAEVIA LSPTTLLATN 120 RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQRSSKEVRR RVYLCPEPTC VHHHPSRALG 180 DLTGVKKHFC RKHGEKKWKC DKCSKRYAVQ SDLKAHAKTC GTREYRCDCG TLFSRLVTAG 240 KRHGSCRNPA EIHASIFSSN FRLRPAALAG QPFHDNVRVE TWKGEGREAD LPNTFITHRA 300 FCDALAQESS RPPTARLHDL GNHLYGNPTT MASGLSQVNA HLSSLQAQSH APTDLLRTEG 360 APRSQLGHLI SSSTPSSFRP PQAPPPSAFY LDNGSTQDFN EEHPPHYSLL QSIPFHGLPP 420 QLPDLQRSST ITSSTSAAVT AASVFNLGFF SHNSSSSSSS TGSIGNFNSG GNQNNQMLMA 480 DGFNSANGNT EPATLFSGIL ISDHVVGGTN SLCNTSMQSD SMLPQMSATA LLQKAAQMGV 540 TTSGGPSLLR GFARSSSSRC SFTGGGGDGG GGLQAQTENE AHLQNLMMTL ANGGTDLFVG 600 AGGRTAFGGS AIAGGHQQQA GVFGALDAGL CIMDETKFNP SGARNLGSSD QLTRDFLGVG 660 SMVRSINSGI TRREPI

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MASASSSSHF LGGIRDKELQ KQMKQQHQQH QQQQQQQQQQ QQQQSSSMAP APAAASDRKR  60
RNQPGNPSKY LKHSNMQNMQ EKQLIQAYLP SLSQPNPHVS AADPDAEVIA LSPTTLLATN  120
RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQRSSKEVRR RVYLCPEPTC VHHHPSRALG  180
DLTGVKKHFC RKHGEKKWKC DKCSKRYAVQ SDLKAHAKTC GTREYRCDCG TLFSRLVTAG  240
KRHGSCRNPA EIHASIFSSN FRLRPAALAG QPFHDNVRVE TWKGEGREAD LPNTFITHRA  300
FCDALAQESS RPPTARLHDL GNHLYGNPTT MASGLSQVNA HLSSLQAQSH APTDLLRTEG  360
APRSQLGHLI SSSTPSSFRP PQAPPPSAFY LDNGSTQDFN EEHPPHYSLL QSIPFHGLPP  420
QLPDLQRSST ITSSTSAAVT AASVFNLGFF SHNSSSSSSS TGSIGNFNSG GNQNNQMLMA  480
DGFNSANGNT EPATLFSGIL ISDHVVGGTN SLCNTSMQSD SMLPQMSATA LLQKAAQMGV  540
TTSGGPSLLR GFARSSSSRC SFTGGGGDGG GGLQAQTENE AHLQNLMMTL ANGGTDLFVG  600
AGGRTAFGGS AIAGGHQQQA GVFGALDAGL CIMDETKFNP SGARNLGSSD QLTRDFLGVG  660
SMVRSINSGI TRREPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	7e-86	C2H2 family protein