PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV97106.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 476aa MW: 51763.6 Da PI: 8.5083

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV97106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.2e-07	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+r nL+ H r H RWV97106.1 31 FVCEICNKGFPREQNLQLHRRGH 53 89*******************88 PP
2	zf-C2H2	11.3	0.0011	107	129	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + RWV97106.1 107 WKCDKCSKKYAVQSDWKAHSKIC 129 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MLILGFSSAS LDPDAEVIAL SPKTLMATNR FVCEICNKGF PREQNLQLHR RGHNLPWKLK 60 QRSNKEVRKK VYICPEATCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS 120 DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAMAANP LANHQALLFS 180 PPAASCEPPS LQPTLLQCHF PHLMRGDEAD ATILGGHGMQ QELSLGGEHQ HQRFNIRSNI 240 PPWLACQEAT SLNMLGLPST FYSTRLEQEH GREDLVPHPP LPPAFHALAP SPHMSATALL 300 QKAAEMGASM SRPAHLGLMA AHTPSSAPFV ADGTSGVGLG LSSHQDMGHG VGGGGGRCDG 360 GFGQGSAPPP LHRDMVATSL SATPGFHGSF EDAIRAIREP RNSNKSSLGR SHGMTEEGGG 420 GINDGMTRDF LGLKAFPHRN ILNLTGFDPC LTTTTSSSSS YEQQQQQQLS KKPWHG

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MLILGFSSAS LDPDAEVIAL SPKTLMATNR FVCEICNKGF PREQNLQLHR RGHNLPWKLK  60
QRSNKEVRKK VYICPEATCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS  120
DWKAHSKICG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAMAANP LANHQALLFS  180
PPAASCEPPS LQPTLLQCHF PHLMRGDEAD ATILGGHGMQ QELSLGGEHQ HQRFNIRSNI  240
PPWLACQEAT SLNMLGLPST FYSTRLEQEH GREDLVPHPP LPPAFHALAP SPHMSATALL  300
QKAAEMGASM SRPAHLGLMA AHTPSSAPFV ADGTSGVGLG LSSHQDMGHG VGGGGGRCDG  360
GFGQGSAPPP LHRDMVATSL SATPGFHGSF EDAIRAIREP RNSNKSSLGR SHGMTEEGGG  420
GINDGMTRDF LGLKAFPHRN ILNLTGFDPC LTTTTSSSSS YEQQQQQQLS KKPWHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	70	KLKQRSNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-88	C2H2 family protein