PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWV99515.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 389aa MW: 42870.9 Da PI: 9.0651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWV99515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.2	7.9e-10	21	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+++H+p RWV99515.1 21 PGEPDCTYYLRTGLCRFGMTCRYNHPP 47 5789*********************97 PP
2	zf-CCCH	39.1	1.2e-12	70	94	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtGtCk+G++CkF+H++ RWV99515.1 70 QPECQYYLRTGTCKFGATCKFHHPR 94 799********************96 PP
3	zf-CCCH	37	5.7e-12	116	140	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++r+G Ck+G++CkF+H++ RWV99515.1 116 ETECAYYMRNGVCKFGSTCKFNHPQ 140 578********************97 PP
4	zf-CCCH	41.5	2.3e-13	274	299	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ RWV99515.1 274 DQPECQFYMKTGDCKFGAACKFHHPR 299 689*********************96 PP
5	zf-CCCH	36.1	1.1e-11	321	345	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f++r+G+Ck+G+ CkF H++ RWV99515.1 321 EPLCIFYSRYGICKFGPHCKFDHPM 345 79*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MWQISLREME SMESGPYPER PGEPDCTYYL RTGLCRFGMT CRYNHPPNRQ MCQAIAAARI 60 KGGFPERVGQ PECQYYLRTG TCKFGATCKF HHPRDKAGIA GRVQLNVLGY PIRPNETECA 120 YYMRNGVCKF GSTCKFNHPQ PSNTMANVRG STVYPGVHSP TSSQQSYPGG LTPLSRPSFI 180 PSPRWQGLSS YAQVIVPQGL VQVPSWNTFS GQLGSGSSSE SQLQLPRTTQ FYGTSRQNET 240 IAGVQGTIPS YRSSALPLGQ YVLARENVFP ERPDQPECQF YMKTGDCKFG AACKFHHPRE 300 RLLPPPNCLL SPLGLPLRAG EPLCIFYSRY GICKFGPHCK FDHPMATPIG LYAYSLPTSS 360 SADVPVSRNL LVSSSGPPPS LEAATGKAR

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MWQISLREME SMESGPYPER PGEPDCTYYL RTGLCRFGMT CRYNHPPNRQ MCQAIAAARI  60
KGGFPERVGQ PECQYYLRTG TCKFGATCKF HHPRDKAGIA GRVQLNVLGY PIRPNETECA  120
YYMRNGVCKF GSTCKFNHPQ PSNTMANVRG STVYPGVHSP TSSQQSYPGG LTPLSRPSFI  180
PSPRWQGLSS YAQVIVPQGL VQVPSWNTFS GQLGSGSSSE SQLQLPRTTQ FYGTSRQNET  240
IAGVQGTIPS YRSSALPLGQ YVLARENVFP ERPDQPECQF YMKTGDCKFG AACKFHHPRE  300
RLLPPPNCLL SPLGLPLRAG EPLCIFYSRY GICKFGPHCK FDHPMATPIG LYAYSLPTSS  360
SADVPVSRNL LVSSSGPPPS LEAATGKAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-140	C3H family protein