PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW00567.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 506aa MW: 55126.4 Da PI: 8.4988

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW00567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RWW00567.1 25 FVCEVCNKGFQREQNLQLHRRGH 47 89*******************88 PP
2	zf-C2H2	14.1	0.00014	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+Lk H +t+ RWW00567.1 104 WKCNKCSKCYAVRSDLKAHSKTC 126 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MSAAADPEVE VIALSPETLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLRLRSGEE 60 EGKRRRRVYL CPEPTCAHHH PSRALGDLTG VKKHFCRKHG EKRWKCNKCS KCYAVRSDLK 120 AHSKTCGTCE YRCGCGTLFS RSVRTYLVSS SNHCHSSSNP ESSSCSFSSC DLYRRDSFIT 180 HRAFCDALAE ESSRLPATGL NLHGNNTVAL RVSQMNTRLT SLRDQGGSGT PAEHLMTAAH 240 PSLFRPTQLP PPAAFCLGNS SNQGFDEEHQ PDLSLLRGKP FDGLMQLPDP QGSTMAAADL 300 FNLSFFSSSS SSTSSIRNNN NGSDQYNQVL IAGDIRDANR RSELTTLFSG NLMSDRVAGG 360 LTSLYNQNES NFLPRMSATA LLQKAAQMGS MTNIGHSLLT GFGNSSSSSP NTGGGNGGDG 420 LQARTENETH LRNLMNSLAN GRTGLIGGPQ QETREFGSDA KLNLWGTDQL TRDFLGVGGM 480 VMRSISGGTS RQEQDHGIDL STSNPR

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MSAAADPEVE VIALSPETLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLRLRSGEE  60
EGKRRRRVYL CPEPTCAHHH PSRALGDLTG VKKHFCRKHG EKRWKCNKCS KCYAVRSDLK  120
AHSKTCGTCE YRCGCGTLFS RSVRTYLVSS SNHCHSSSNP ESSSCSFSSC DLYRRDSFIT  180
HRAFCDALAE ESSRLPATGL NLHGNNTVAL RVSQMNTRLT SLRDQGGSGT PAEHLMTAAH  240
PSLFRPTQLP PPAAFCLGNS SNQGFDEEHQ PDLSLLRGKP FDGLMQLPDP QGSTMAAADL  300
FNLSFFSSSS SSTSSIRNNN NGSDQYNQVL IAGDIRDANR RSELTTLFSG NLMSDRVAGG  360
LTSLYNQNES NFLPRMSATA LLQKAAQMGS MTNIGHSLLT GFGNSSSSSP NTGGGNGGDG  420
LQARTENETH LRNLMNSLAN GRTGLIGGPQ QETREFGSDA KLNLWGTDQL TRDFLGVGGM  480
VMRSISGGTS RQEQDHGIDL STSNPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	68	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	2e-80	C2H2 family protein