PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW00970.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 359aa MW: 38532.5 Da PI: 8.1038

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW00970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.7	4e-08	104	128	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaHg RWW00970.1 104 FKTKLCCKFRA-GTCPYITNCNFAHG 128 69*******.***********8 PP
2	zf-CCCH	23.8	7.9e-08	175	200	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk ++C+ f+ C+yGd+C+F+H+ RWW00970.1 175 YKGRRCKKFYTEEGCPYGDSCTFIHD 200 899**********************7 PP
3	zf-CCCH	38.8	1.5e-12	236	261	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C+ + tG+C++G++C+FaHg RWW00970.1 236 WKTRTCHKWEMTGYCPFGNKCHFAHG 261 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDYGGGAAYP GSNAIAIIPD ASGPPHSWPP GGNDQPMWAT DEDYRSWSGD PSADAASNSA 60 YDGRLSRSRA GSEQPPGKKG RNSQADSQGG SRTTSSKAIG KMFFKTKLCC KFRAGTCPYI 120 TNCNFAHGIE ELRRPPPNWQ EIVAAQEEGS SEPREERRIP TMNPLGVAGE SERSYKGRRC 180 KKFYTEEGCP YGDSCTFIHD EQSKARESVA ISLSPMVGGG GLGGGANAPT QKPSNWKTRT 240 CHKWEMTGYC PFGNKCHFAH GAAATELHRY GGGPVETEGR DASSAVSDSK HGGVHTKFPP 300 SDASVASNSS VPHADTYHIG VPSQRSAGVI QRQGQRSIGK WKGPDKISKI YGDWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDYGGGAAYP GSNAIAIIPD ASGPPHSWPP GGNDQPMWAT DEDYRSWSGD PSADAASNSA  60
YDGRLSRSRA GSEQPPGKKG RNSQADSQGG SRTTSSKAIG KMFFKTKLCC KFRAGTCPYI  120
TNCNFAHGIE ELRRPPPNWQ EIVAAQEEGS SEPREERRIP TMNPLGVAGE SERSYKGRRC  180
KKFYTEEGCP YGDSCTFIHD EQSKARESVA ISLSPMVGGG GLGGGANAPT QKPSNWKTRT  240
CHKWEMTGYC PFGNKCHFAH GAAATELHRY GGGPVETEGR DASSAVSDSK HGGVHTKFPP  300
SDASVASNSS VPHADTYHIG VPSQRSAGVI QRQGQRSIGK WKGPDKISKI YGDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-109	C3H family protein