PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW01179.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 462aa MW: 49868.6 Da PI: 8.3448

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW01179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RWW01179.1 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.1	0.0006	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + RWW01179.1 82 WKCDKCSKRYAVQSDWKAHSKIC 104 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLRQKDTK DVRRRVYLCP EPTCPHHEPS 60 RPLGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRL 120 VAAHENARLP AGLHTLGSSH IYGNSNMFLN LPRVSSHTTS LHGQHIMSPP KPLISGVPQS 180 PPSSSAFHLN GSSDKGISEG TQSHHSLPQC KTFHGLMQLP ELQGNAAAST SASAAAASAD 240 LFNLSFFSNN SSICRNPIAD QFYDSNRINE PTACFAGNLG DEQMEGGISF RYSTLMNNEP 300 VMLPQQLSAT AFLQRAAQLG ATSNGGSSLL AGFSGSHGGG IDGFGPHMEN DTHFQYLMNS 360 LARGGIDLVG SSAGMATFEG GCTTTGGHHG QENTGVDTFN VNNIDEAKYN LPSSDGLTRD 420 FLGVGSTPRS MGGGISQREQ HHGVAMSSGS PTQYSFAGGS LQ

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLRQKDTK DVRRRVYLCP EPTCPHHEPS  60
RPLGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRL  120
VAAHENARLP AGLHTLGSSH IYGNSNMFLN LPRVSSHTTS LHGQHIMSPP KPLISGVPQS  180
PPSSSAFHLN GSSDKGISEG TQSHHSLPQC KTFHGLMQLP ELQGNAAAST SASAAAASAD  240
LFNLSFFSNN SSICRNPIAD QFYDSNRINE PTACFAGNLG DEQMEGGISF RYSTLMNNEP  300
VMLPQQLSAT AFLQRAAQLG ATSNGGSSLL AGFSGSHGGG IDGFGPHMEN DTHFQYLMNS  360
LARGGIDLVG SSAGMATFEG GCTTTGGHHG QENTGVDTFN VNNIDEAKYN LPSSDGLTRD  420
FLGVGSTPRS MGGGISQREQ HHGVAMSSGS PTQYSFAGGS LQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	4e-79	C2H2 family protein