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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWW04129.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 222aa MW: 25240.8 Da PI: 10.0521 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.5 | 5.5e-19 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq++ Le F+ +r++ a ++++LA+klgL+ +qV vWFqNrRa++k
RWW04129.1 63 KKRRLSEEQVKLLEMSFRDERKLEAGRKAHLAAKLGLDANQVAVWFQNRRARHK 116
45689***********************************************99 PP
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| 2 | HD-ZIP_I/II | 109.3 | 2.7e-35 | 63 | 154 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrls+eqvklLE+sF+ e+kLe rK++la +Lgl++ qvavWFqnrRAR+k+kq+ + y Lk a+da++ +++rLe+ev++L+e+l+e
RWW04129.1 63 KKRRLSEEQVKLLEMSFRDERKLEAGRKAHLAAKLGLDANQVAVWFQNRRARHKSKQVKEAYVELKLAHDAVVVDKCRLENEVSKLKEKLSE 154
9***************************************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 222 aa Download sequence |
MTEEKKVQIP SLWASERCSQ TPQGRSASRS FTFAFLFRVH VHVRVPGEKR TRRRRKKAKG 60 DAKKRRLSEE QVKLLEMSFR DERKLEAGRK AHLAAKLGLD ANQVAVWFQN RRARHKSKQV 120 KEAYVELKLA HDAVVVDKCR LENEVSKLKE KLSEAEEEVR KLASGMNGAS GGNAESGGGG 180 SPSSCFSAAS LQWQQEEAEL MCINEYDFTN YMMMEWADLY GV |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 49 | 57 | KRTRRRRKK |
| 2 | 52 | 66 | RRRRKKAKGDAKKRR |
| 3 | 52 | 67 | RRRRKKAKGDAKKRRL |
| 4 | 53 | 67 | RRRRKKAKGDAKKRR |
| 5 | 53 | 68 | RRRRKKAKGDAKKRRL |
| 6 | 54 | 69 | RRRRKKAKGDAKKRRL |
| 7 | 111 | 119 | RRARHKSKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 1e-27 | HD-ZIP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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