PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW04130.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 380aa MW: 42548.3 Da PI: 8.9715

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW04130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2.1e-19	215	269	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+t++++eql+ Le F+ +r++ ++ +LA++lgL+ +qV vWFqNrRa++k+ RWW04130.1 215 KKTRLSDEQLKFLEMSFQDERKLESGRKVHLATELGLDPKQVAVWFQNRRARHKN 269 7899*************************************************95 PP
2	HD-ZIP_I/II	114.6	6.2e-37	215	305	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk rls+eq+k+LE+sF+ e+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+kq+E+ y++Lk a+da++ e+++Le+ev++L+e+l RWW04130.1 215 KKTRLSDEQLKFLEMSFQDERKLESGRKVHLATELGLDPKQVAVWFQNRRARHKNKQVEEAYAKLKMAHDAVVFEKCHLENEVSKLKEKLL 305 9**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSGGACGKCR LVSSVLKRSQ GELLGELRDR VISVPWGWGM SLPSEGDRGF FPGIVRQRTL 60 LRYQTLLLAS KCYWILCRGW GVSTAWLDPH AQDHLSRIGG LAWLGWVRNG VDRCSLGLGD 120 PPLECSAPWS VPARRSRERQ SCTVHKGEYE PRWYESCGRE DAVPLILSVR TLLSIASRFD 180 HCPMFFRANS SSVGETRTRR RRRKANGDGA GGEAKKTRLS DEQLKFLEMS FQDERKLESG 240 RKVHLATELG LDPKQVAVWF QNRRARHKNK QVEEAYAKLK MAHDAVVFEK CHLENEVSKL 300 KEKLLEAEEE IRKLSLGTGG AGASGSNAER GGSSPSSSLS TVSHHPLVGE FGVEGEADLM 360 NIQEYNFNSY MMEWANFYGV

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSGGACGKCR LVSSVLKRSQ GELLGELRDR VISVPWGWGM SLPSEGDRGF FPGIVRQRTL  60
LRYQTLLLAS KCYWILCRGW GVSTAWLDPH AQDHLSRIGG LAWLGWVRNG VDRCSLGLGD  120
PPLECSAPWS VPARRSRERQ SCTVHKGEYE PRWYESCGRE DAVPLILSVR TLLSIASRFD  180
HCPMFFRANS SSVGETRTRR RRRKANGDGA GGEAKKTRLS DEQLKFLEMS FQDERKLESG  240
RKVHLATELG LDPKQVAVWF QNRRARHKNK QVEEAYAKLK MAHDAVVFEK CHLENEVSKL  300
KEKLLEAEEE IRKLSLGTGG AGASGSNAER GGSSPSSSLS TVSHHPLVGE FGVEGEADLM  360
NIQEYNFNSY MMEWANFYGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	271	RRARHKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-31	HD-ZIP family protein