PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW06829.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 923aa MW: 102599 Da PI: 6.5042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW06829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	890	916	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg++F+ s++ rH r+ H RWW06829.1 890 YKCKfsGCGQTFRFVSDFSRHRRKtgH 916 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence
MATVAATKAV YIRHRGRRKL QMCLSMVEEV VILPLGARSS RLRDRKKEER EILVKKAFLD 60 DMMNESNLLF VLLAKATISS AVLWEPEMLP ATCLGTQVEQ SSSLSSEAHG LTSGDLHGIK 120 KECQSLGKDS LDYEADACCT HDANETTADL SSRSSHCALF SEANENACNN TEGIVDDEID 180 LPFGLDVDSG SLACVAYYLK IKALAISIAE EINIQFNCED VPLVNASSSD LDLINVSIDD 240 EGHEEDGNDW TSKLGLNLRY CAKLKKQSPS NQEHLTLSLG GIFSGPSPTA VSNLKWLSRK 300 SRTPHKVVGV IQSKSQFDIN NEKCVLIDGK TNSITDSAKV TKVYRSLEPH HIGTMHHSLL 360 IKGMLKESGS GNTIVKVDDR DDERRKCGSA NKIISKMKDD TGDNLHTIPV LIAEYPQMHQ 420 VSWVTLRVTS YSEAVPPVKL PASDESDVGY YEQLEIHSDG LSCKEAVCEP VKSAGKQPFV 480 DPELTQGFEE AYRSHDKFCS SDKSEILADR LTLESGTSEA QQVSAVDTAN LGDEFNGNRE 540 AACGTGRRPL HYSSENLEDS CRTLLSDSQF LCLSESLINS EIQLNNLSVQ EPLGDDMVAN 600 RANSNSMPDI SINDGSKMLQ EILVRTEHIA DGANIIKSEN YFAVNNLVVN NSEMLQKAHC 660 ADEMEAFVKT DGRTAFDHSV KLAEIFAISM AEGSVMQEVH SMELCGSADS SSLLNGVQPN 720 YHNPSRVDLI QYVRRRNKRK RQQEQSTGCQ DSLVCFVRSP CEGLRPRTLL KTDVKVDIFT 780 LEKSSAIKER RKAGNSIVQR EDKRKAFKCD IEGCFMSFQT RGELSLHKRD RCTIEGCGKR 840 FSCHKYAVRH QCVHNDDRPL RCPWKGCNMT FKWAWARTEH VRVHTGERPY KCKFSGCGQT 900 FRFVSDFSRH RRKTGHYATP SAG

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence

MATVAATKAV YIRHRGRRKL QMCLSMVEEV VILPLGARSS RLRDRKKEER EILVKKAFLD  60
DMMNESNLLF VLLAKATISS AVLWEPEMLP ATCLGTQVEQ SSSLSSEAHG LTSGDLHGIK  120
KECQSLGKDS LDYEADACCT HDANETTADL SSRSSHCALF SEANENACNN TEGIVDDEID  180
LPFGLDVDSG SLACVAYYLK IKALAISIAE EINIQFNCED VPLVNASSSD LDLINVSIDD  240
EGHEEDGNDW TSKLGLNLRY CAKLKKQSPS NQEHLTLSLG GIFSGPSPTA VSNLKWLSRK  300
SRTPHKVVGV IQSKSQFDIN NEKCVLIDGK TNSITDSAKV TKVYRSLEPH HIGTMHHSLL  360
IKGMLKESGS GNTIVKVDDR DDERRKCGSA NKIISKMKDD TGDNLHTIPV LIAEYPQMHQ  420
VSWVTLRVTS YSEAVPPVKL PASDESDVGY YEQLEIHSDG LSCKEAVCEP VKSAGKQPFV  480
DPELTQGFEE AYRSHDKFCS SDKSEILADR LTLESGTSEA QQVSAVDTAN LGDEFNGNRE  540
AACGTGRRPL HYSSENLEDS CRTLLSDSQF LCLSESLINS EIQLNNLSVQ EPLGDDMVAN  600
RANSNSMPDI SINDGSKMLQ EILVRTEHIA DGANIIKSEN YFAVNNLVVN NSEMLQKAHC  660
ADEMEAFVKT DGRTAFDHSV KLAEIFAISM AEGSVMQEVH SMELCGSADS SSLLNGVQPN  720
YHNPSRVDLI QYVRRRNKRK RQQEQSTGCQ DSLVCFVRSP CEGLRPRTLL KTDVKVDIFT  780
LEKSSAIKER RKAGNSIVQR EDKRKAFKCD IEGCFMSFQT RGELSLHKRD RCTIEGCGKR  840
FSCHKYAVRH QCVHNDDRPL RCPWKGCNMT FKWAWARTEH VRVHTGERPY KCKFSGCGQT  900
FRFVSDFSRH RRKTGHYATP SAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	734	740	RRRNKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	3e-54	C2H2 family protein