PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW08286.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 576aa MW: 63231.6 Da PI: 9.5069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW08286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	201	217	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C+k+F+r n++ RWW08286.1 201 FSCTVCNKTFNRYNNMQ 217 89********9988765 PP
2	zf-C2H2	12.4	0.00049	287	309	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk F + + ++H +++ RWW08286.1 287 YACRRCGKAFAVRGDWRTHEKNC 309 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
HLCRPPSLFD AQPLARALPS LPITHSLQPH THINPLLSSC SLRLPHPPSP LLRSRRIMFS 60 KGGTSLSSKT NDEEEDRSVL LLSLGPPGCQ GTLSSSSSPA SSSCSSSTCT SVASSCSIPA 120 SCSSSFMQQQ QQQQYLSQTS TQRDDDSPVT IALSIGPPNA SASASTSGGV ATTAAAAGFN 180 PVPRQYWIPS PAEILIGTTQ FSCTVCNKTF NRYNNMQVYE RHARYRRGSE SLRGVTRQVP 240 SPSLLKLPCY CCAEGCKNNI EHPRSRPLKD FRTLQTHYKR KHGARPYACR RCGKAFAVRG 300 DWRTHEKNCG KLWFCICGSD FKHKRSLKDH VRSFGSGHAP HLVEMMSVDE EEEDEVTVVY 360 CRCVPCTRER ERDGERNGSM YQRRFAQKCQ HGTWSAEGGC SHYVCVLRVE PKHCSSFPFS 420 ANNKHKLQRK RAVTPRCHCM PGCISLHGNR NPDSYVSLKE EGVVAVWGVP VISENDGCGS 480 RERGRGGPPE DPSMSGRTCP PRAPGPRKGR ERGGGGWGRE KVRPELGGVL RPRQNTPNPC 540 APKAAAESYA RSTQLGFRSL FKGLPVPLSN ILPKQS

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

HLCRPPSLFD AQPLARALPS LPITHSLQPH THINPLLSSC SLRLPHPPSP LLRSRRIMFS  60
KGGTSLSSKT NDEEEDRSVL LLSLGPPGCQ GTLSSSSSPA SSSCSSSTCT SVASSCSIPA  120
SCSSSFMQQQ QQQQYLSQTS TQRDDDSPVT IALSIGPPNA SASASTSGGV ATTAAAAGFN  180
PVPRQYWIPS PAEILIGTTQ FSCTVCNKTF NRYNNMQVYE RHARYRRGSE SLRGVTRQVP  240
SPSLLKLPCY CCAEGCKNNI EHPRSRPLKD FRTLQTHYKR KHGARPYACR RCGKAFAVRG  300
DWRTHEKNCG KLWFCICGSD FKHKRSLKDH VRSFGSGHAP HLVEMMSVDE EEEDEVTVVY  360
CRCVPCTRER ERDGERNGSM YQRRFAQKCQ HGTWSAEGGC SHYVCVLRVE PKHCSSFPFS  420
ANNKHKLQRK RAVTPRCHCM PGCISLHGNR NPDSYVSLKE EGVVAVWGVP VISENDGCGS  480
RERGRGGPPE DPSMSGRTCP PRAPGPRKGR ERGGGGWGRE KVRPELGGVL RPRQNTPNPC  540
APKAAAESYA RSTQLGFRSL FKGLPVPLSN ILPKQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	4e-85	C2H2 family protein