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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWW08939.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 292aa MW: 32162.1 Da PI: 6.062 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 58.1 | 1.5e-18 | 103 | 156 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL rqV +WFqNrRa++k
RWW08939.1 103 KKRRLNVEQVRTLEKSFELGNKLEPERKMQLAAALGLRPRQVAIWFQNRRARWK 156
4568999**********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.4 | 1.5e-41 | 102 | 192 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqv++LE+sFe +kLeperK++la +Lgl+prqva+WFqnrRAR+ktkqlEkdy++L+r++da+++ene+L++++++L++e+
RWW08939.1 102 EKKRRLNVEQVRTLEKSFELGNKLEPERKMQLAAALGLRPRQVAIWFQNRRARWKTKQLEKDYDVLRRQFDAINAENEALKAHNKKLQTEV 192
69**************************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 292 aa Download sequence |
MAWPLPSSPQ ASCSSFKLPV KMTTDWPALS APSSPAASTT SEVICGGSHF QASKTVVVDL 60 VVVHAGVGPA TGKRSASFSG AETCEEATGD DELSDDASLA GEKKRRLNVE QVRTLEKSFE 120 LGNKLEPERK MQLAAALGLR PRQVAIWFQN RRARWKTKQL EKDYDVLRRQ FDAINAENEA 180 LKAHNKKLQT EVLALRGREA SDLINLNKET EGSCSNRSEN SSEINLDISR TPVAERSCPP 240 LQILPYFQSV RPADPDCPKV ENDAPEGSFS NLLCSIGDQP AFWPWSEHHN FQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 151 | 159 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69780.1 | 2e-78 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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