PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW09401.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 394aa MW: 42942.3 Da PI: 9.9159

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW09401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RWW09401.1 70 YVCEICHQGFQRDQNLQMHRRRH 92 9*********************9 PP
2	zf-C2H2	14.2	0.00012	148	169	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ RWW09401.1 148 ACSRCSKAYAVQSDYKAHLKTC 169 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MLRSSPQQAV SALPVNSVSC STASSPPRTP ISSADDDKAG KRKRRPAGTP DPDAEVVSLS 60 PRTLLESDRY VCEICHQGFQ RDQNLQMHRR RHKVPWKLLR RDAAEARKRV FVCPEPSCLH 120 HDPRHALGDL VGIKKHFRRK HSDRRQWACS RCSKAYAVQS DYKAHLKTCG TRGHSCDCGR 180 VFSRWPATPR PSSLSWTTSS TSPSTEPTLS GRTTSTAAAA AAAASSLPLA LHVLPTSTSS 240 PDSDEAQATV LQLSIGPPVG GFPSSNAGDD PREQLRLAAR EKALASEARQ QALKQVEMAE 300 KELANAKTIR RQAQAELENA YLLRDHTAKQ INLMLLQITC HSCRKQLQSK SGTVWEEGPK 360 AAASYAASAM AESKEGDSND GSHFGVSRNT QLSP

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MLRSSPQQAV SALPVNSVSC STASSPPRTP ISSADDDKAG KRKRRPAGTP DPDAEVVSLS  60
PRTLLESDRY VCEICHQGFQ RDQNLQMHRR RHKVPWKLLR RDAAEARKRV FVCPEPSCLH  120
HDPRHALGDL VGIKKHFRRK HSDRRQWACS RCSKAYAVQS DYKAHLKTCG TRGHSCDCGR  180
VFSRWPATPR PSSLSWTTSS TSPSTEPTLS GRTTSTAAAA AAAASSLPLA LHVLPTSTSS  240
PDSDEAQATV LQLSIGPPVG GFPSSNAGDD PREQLRLAAR EKALASEARQ QALKQVEMAE  300
KELANAKTIR RQAQAELENA YLLRDHTAKQ INLMLLQITC HSCRKQLQSK SGTVWEEGPK  360
AAASYAASAM AESKEGDSND GSHFGVSRNT QLSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-108	C2H2 family protein