PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW12387.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 470aa MW: 53232.9 Da PI: 10.4375

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW12387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.9e-05	354	377	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs+k +L H r RWW12387.1 354 FTCDieGCTMSFSTKQDLALHKRD 377 8999*************985 PP
2	zf-C2H2	14.3	0.00012	379	401	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H ++H RWW12387.1 379 CPvkGCGKKFFSHKYLVQHRKVH 401 9999*****************99 PP
3	zf-C2H2	13.1	0.00029	437	463	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H RWW12387.1 437 YVCWepGCGQTFRFVSDFSRHKRKtgH 463 899999*****************9666 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MMKYLTYDRL DTATMPGGGQ ERVWGRTQLA CSLLSSKDGG VTNEMKGCIE MSLKEDILLT 60 LDLSLCNEAK LLAEELGIGY VWKDVKFREA NKQDQERIKA ALEDEEAMPT NGDWTVKLGI 120 NLYYTANLSK SPLYSKQMPY NPVIYKVFGR NSMGNSPVKP KANGRRPGRQ RKIVVAGRWC 180 GKVWMSNQVH PYLAQRQEHT EELYSLDTDQ KPLIEIDIEH SSKASSKRNS SGSSVATKNS 240 GRKRKKPLSK AAKSKKRRCT MADADSKSED VSGTSASSLG RALRSNHRRQ NVSTSLQKSS 300 LKDESGGPST RLRNRSSKCE EVKKKLAIKK QSRKKKANTA QTANLAPKDE EQEFTCDIEG 360 CTMSFSTKQD LALHKRDICP VKGCGKKFFS HKYLVQHRKV HMDDRPLVCP WKGCKMTFKW 420 PWARTEHIRV HTGDRPYVCW EPGCGQTFRF VSDFSRHKRK TGHSAKKGRR

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MMKYLTYDRL DTATMPGGGQ ERVWGRTQLA CSLLSSKDGG VTNEMKGCIE MSLKEDILLT  60
LDLSLCNEAK LLAEELGIGY VWKDVKFREA NKQDQERIKA ALEDEEAMPT NGDWTVKLGI  120
NLYYTANLSK SPLYSKQMPY NPVIYKVFGR NSMGNSPVKP KANGRRPGRQ RKIVVAGRWC  180
GKVWMSNQVH PYLAQRQEHT EELYSLDTDQ KPLIEIDIEH SSKASSKRNS SGSSVATKNS  240
GRKRKKPLSK AAKSKKRRCT MADADSKSED VSGTSASSLG RALRSNHRRQ NVSTSLQKSS  300
LKDESGGPST RLRNRSSKCE EVKKKLAIKK QSRKKKANTA QTANLAPKDE EQEFTCDIEG  360
CTMSFSTKQD LALHKRDICP VKGCGKKFFS HKYLVQHRKV HMDDRPLVCP WKGCKMTFKW  420
PWARTEHIRV HTGDRPYVCW EPGCGQTFRF VSDFSRHKRK TGHSAKKGRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	246	RKRKK
2	242	258	RKRKKPLSKAAKSKKRR
3	243	259	RKRKKPLSKAAKSKKRR
4	244	260	RKRKKPLSKAAKSKKRR
5	323	336	KKKLAIKKQSRKKK
6	324	337	KKKLAIKKQSRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	3e-66	C2H2 family protein