PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW12839.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 498aa MW: 54128.7 Da PI: 8.7434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW12839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RWW12839.1 23 FVCEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP
2	zf-C2H2	12	0.00066	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + RWW12839.1 99 WKCDKCSKRYAVQSDWKAHSKIC 121 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MITGPDAEVI ALSPRSLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPDQVR 60 RRVYVCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKRWK CDKCSKRYAV QSDWKAHSKI 120 CGTREYRCDC GTLFSSFTAF FISIYINVGN QCRRDSFITH RAFCDALAQE RATLTTGINS 180 IGSHSYANRG INLGLPPLNS QLSLQDQAYL FTDLVRLRAS SGGSTQFDHL NATAFRQPQP 240 PHPSPFYAGG GPNHGFNEDP QFASSSSSAA AAGLFNLGFF SNSGGNACVT QSGHLLGPDQ 300 YINNAGGVTE PTMLITGNLM GNHIDTYMSS LCNPSMHSEE PLMSATALLQ KASQMGATSS 360 GGRRSSMLRG YSGSYSAGTG HASLESPGIH VESENHFQDI MSSLASGNNG VSGGVNQQAS 420 GFSGFILDSE KMDERKLHHN LSAGGIGGPD RLTRDFLGVG SMMRSMVREQ HLDMGMSFMD 480 SEKKTGSSNR SFGGGRLP

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MITGPDAEVI ALSPRSLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPDQVR  60
RRVYVCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKRWK CDKCSKRYAV QSDWKAHSKI  120
CGTREYRCDC GTLFSSFTAF FISIYINVGN QCRRDSFITH RAFCDALAQE RATLTTGINS  180
IGSHSYANRG INLGLPPLNS QLSLQDQAYL FTDLVRLRAS SGGSTQFDHL NATAFRQPQP  240
PHPSPFYAGG GPNHGFNEDP QFASSSSSAA AAGLFNLGFF SNSGGNACVT QSGHLLGPDQ  300
YINNAGGVTE PTMLITGNLM GNHIDTYMSS LCNPSMHSEE PLMSATALLQ KASQMGATSS  360
GGRRSSMLRG YSGSYSAGTG HASLESPGIH VESENHFQDI MSSLASGNNG VSGGVNQQAS  420
GFSGFILDSE KMDERKLHHN LSAGGIGGPD RLTRDFLGVG SMMRSMVREQ HLDMGMSFMD  480
SEKKTGSSNR SFGGGRLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-103	C2H2 family protein