PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW13430.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LSD

Protein Properties

Length: 124aa MW: 12819.9 Da PI: 7.9249

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW13430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.9	2.8e-12	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C +V RWW13430.1 8 CSGCRNLLIYPGGATSVCCAVCSAV 32 **********************998 PP
2	zf-LSD1	41.5	2.2e-13	47	71	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA++V+C++C+tV RWW13430.1 47 CGGCHTLLMYVRGASRVQCSCCHTV 71 ************************9 PP
3	zf-LSD1	37.6	3.6e-12	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V RWW13430.1 85 CGNCHMLLMYQYGARSVKCAVCSFV 109 **********************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence
GGQSQLVCSG CRNLLIYPGG ATSVCCAVCS AVTTVPLPGT EMAQLICGGC HTLLMYVRGA 60 SRVQCSCCHT VNLALEANQV AHVNCGNCHM LLMYQYGARS VKCAVCSFVT SVGASPSTEQ 120 KPGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	8e-62	LSD family protein