PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW13952.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 557aa MW: 59955.2 Da PI: 8.3767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW13952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H RWW13952.1 89 FVCEVCNKGFQREQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12.6	0.00042	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWW13952.1 165 WKCDKCSKRYAVQSDWKAHSKTC 187 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
EGLFCGSNLD WSVILDRHQI RTAVCCEWLP KEKTPTTRLR SESEKANIPS LASPFRLIPD 60 SLKSTIETAD PDAEVIALSP RALLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK 120 NPKEARRRVY LCPEPTCVHH DPSRALGDLT GIKKHYCRKH GEKKWKCDKC SKRYAVQSDW 180 KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARVPSGINVY GNSGISSGLP 240 QVNSQLCSLQ TSAVDLLRLG GGGGGATQFV DHLTASAFRP PPPPQRTPFY PGGGSSQELN 300 GDPQFLQNMP TNTNASCSSS SSAAAAGNLF NLGFFSNNRS CMNTDEQAAT LFAGNLMSNN 360 IDMNMSSLLT SSLHRESAAP QMSATALLQK AAQMGATSSR GCFGIRYSAA GGAKHASLRD 420 DSESSGLGES SRTQVENENH LQNLMHSLAN GSSGIFDGGN EPGTAVLGGF NPGLCGMDDD 480 NLHRNPSSGA MGGSDRLTRD FLGVGSVMRS LQGGGMVQPE RQLGISMATV DSETKSGSCS 540 LLLPYGDGSL LSRRGNP

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

EGLFCGSNLD WSVILDRHQI RTAVCCEWLP KEKTPTTRLR SESEKANIPS LASPFRLIPD  60
SLKSTIETAD PDAEVIALSP RALLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK  120
NPKEARRRVY LCPEPTCVHH DPSRALGDLT GIKKHYCRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARVPSGINVY GNSGISSGLP  240
QVNSQLCSLQ TSAVDLLRLG GGGGGATQFV DHLTASAFRP PPPPQRTPFY PGGGSSQELN  300
GDPQFLQNMP TNTNASCSSS SSAAAAGNLF NLGFFSNNRS CMNTDEQAAT LFAGNLMSNN  360
IDMNMSSLLT SSLHRESAAP QMSATALLQK AAQMGATSSR GCFGIRYSAA GGAKHASLRD  420
DSESSGLGES SRTQVENENH LQNLMHSLAN GSSGIFDGGN EPGTAVLGGF NPGLCGMDDD  480
NLHRNPSSGA MGGSDRLTRD FLGVGSVMRS LQGGGMVQPE RQLGISMATV DSETKSGSCS  540
LLLPYGDGSL LSRRGNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-105	C2H2 family protein