PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW18561.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 28400.7 Da PI: 6.4099

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW18561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le F +++++ e++ +LA++lgL+ +qV vWFqNrRa++k RWW18561.1 86 KKRRLSDEQVRFLEMRFGEEKKLECERKVHLAAELGLDPKQVAVWFQNRRARHK 139 45689***********************************************99 PP
2	HD-ZIP_I/II	115.3	3.7e-37	86	176	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE+ F ee+kLe erKv+la eLgl+p+qvavWFqnrRAR+k+kq+E+ y +Lk+ +da + e+++Le+ev +L+++l RWW18561.1 86 KKRRLSDEQVRFLEMRFGEEKKLECERKVHLAAELGLDPKQVAVWFQNRRARHKSKQVEEAYLKLKSIHDATVVEKCHLENEVLKLKDKLL 176 9**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MVNNEMMISE AGMSHEEEKM CFSALLAPEL HPQMPRGLSI HAFSCSSPRT PPVTSYLMLV 60 LLMVGETRVR RRRKKTKGEG VEGDAKKRRL SDEQVRFLEM RFGEEKKLEC ERKVHLAAEL 120 GLDPKQVAVW FQNRRARHKS KQVEEAYLKL KSIHDATVVE KCHLENEVLK LKDKLLEAEE 180 EITKLSLVAN GGVVGGNGGS GEVVGSPSSS TLTYQPLIAD FGVAEKEAEL MYIQEYEFND 240 AMMEWAYFYG M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	89	RRRRKKTKGEGVEGDAKKRR
2	71	90	RRRRKKTKGEGVEGDAKKRR
3	72	91	RRRRKKTKGEGVEGDAKKRR
4	73	92	RRRRKKTKGEGVEGDAKKRR
5	134	142	RRARHKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-32	HD-ZIP family protein