PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW19978.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 26022.1 Da PI: 10.4354

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW19978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58	1.2e-18	135	168	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 k+i+n+ rqvtfskRr g++KKA ELSvLCda+ RWW19978.1 135 KKIDNTAARQVTFSKRRRGLFKKAAELSVLCDAD 168 68******************************97 PP
2	K-box	32.7	3e-12	168	218	37	87
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + Ge Le+L+++eLqqLe+ Le +l ++ ++K l e+ +l++ + + RWW19978.1 168 DMRGEALEKLTVEELQQLEKTLEAGLGRVIDRKAAQLAEENVRLRRHVRPV 218 589*************************************99999887655 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MRTGALGWLV QNFSIDVAWA TLCVVVFLGW WDGPSICLLT PSGVHHIFPC LLDDETEQRP 60 IPSSQSELAA RGGASRNMRC ITPQTSNPPT PTVLCGTCAS LPSHNAPPRN AVGVGGRRKR 120 KRKKGEMVRE KIQIKKIDNT AARQVTFSKR RRGLFKKAAE LSVLCDADMR GEALEKLTVE 180 ELQQLEKTLE AGLGRVIDRK AAQLAEENVR LRRHVRPVYQ PSSSLSSLQN IDSMK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	122	RRKRKR
2	117	123	RRKRKRK
3	118	123	RKRKRK
4	118	124	RRKRKRK
5	120	124	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.2	2e-20	MIKC_MADS family protein