PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW20069.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LSD

Protein Properties

Length: 130aa MW: 14652.2 Da PI: 8.4069

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW20069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.6	2.4e-14	3	27	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsYPr+A++V+Ca+C+t+ RWW20069.1 3 CGGCRQLLSYPRNATYVQCASCQTI 27 ***********************97 PP
2	zf-LSD1	37.6	3.7e-12	41	63	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg C +lL+YP+GApsVRC++C RWW20069.1 41 CGRCSVLLMYPYGAPSVRCSSCC 63 **********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence
MVCGGCRQLL SYPRNATYVQ CASCQTINLV LEAHQVGNVK CGRCSVLLMY PYGAPSVRCS 60 SCCFITKIGV SKHLIYTAVY CFYDNTLLSV PFPFVSTFMS AFIIIVISRS KERMEKDFWL 120 SQDFSLHYGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-29	LSD family protein