PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW23177.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

CO-like

Protein Properties

Length: 407aa MW: 45092.2 Da PI: 5.1768

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW23177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.1	1.2e-05	21	52	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 r C+ + +++ +++C+ + +lC+ C ++ H+ RWW23177.1 21 RPCDGCLRHRGRWYCTAHNAFLCQICDSSVHS 52 78***************************993 PP
2	CCT	68.5	1.8e-23	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrF+k++ RWW23177.1 356 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFAKRT 399 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MDDSEKQQRP SPDAVGGKAV RPCDGCLRHR GRWYCTAHNA FLCQICDSSV HSVNPLVRRH 60 QRFRLTPTSL IGEPGESSPS WLVGFERKAR TSRPQHRTNM MAAGGFPEQL VDASVDEDAD 120 GEQEEELSYR VPTRNPLVAS FCSPPPPLDN SNATSSGDAA PKTSVELSDN TPASPSTTNK 180 MDGFFPMDLE ISEFAARIKS LLGGDVVGGD DTFCVANLEL AEPVAENTGC SIEDNARHVK 240 MEQPDCEEDE SEGELELNLE CSLPFSRGDE EDKVADTAVT GDQGAEKKAK LRLDYESIIM 300 AWSRQGSSPW TNGERPQINV DNCWPDYMEM WTGRGMETEG ACHGGEIGAY LGDGKREARV 360 TRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFAKRTP ALACGHG

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MDDSEKQQRP SPDAVGGKAV RPCDGCLRHR GRWYCTAHNA FLCQICDSSV HSVNPLVRRH  60
QRFRLTPTSL IGEPGESSPS WLVGFERKAR TSRPQHRTNM MAAGGFPEQL VDASVDEDAD  120
GEQEEELSYR VPTRNPLVAS FCSPPPPLDN SNATSSGDAA PKTSVELSDN TPASPSTTNK  180
MDGFFPMDLE ISEFAARIKS LLGGDVVGGD DTFCVANLEL AEPVAENTGC SIEDNARHVK  240
MEQPDCEEDE SEGELELNLE CSLPFSRGDE EDKVADTAVT GDQGAEKKAK LRLDYESIIM  300
AWSRQGSSPW TNGERPQINV DNCWPDYMEM WTGRGMETEG ACHGGEIGAY LGDGKREARV  360
TRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFAKRTP ALACGHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	383	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	5e-53	CO-like family protein