PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW25037.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 385aa MW: 43160.4 Da PI: 9.1798

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW25037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	211	233	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C++f+r+G C++Gd C aHg RWW25037.1 211 TPCPDFRRGGGCRRGDACELAHG 233 69****************99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MKGNETKLPP ASLFIVRFHS FYALHRSGAY TYLMNQHDKE MLEWLLVFKL VLSTSVSCDE 60 LVFFHTLTPK RRQQHKKKRR RRLPMVPGER THCDPTAHVP PWHLAEYPTA VMQQYSALPV 120 SGVAGLSCDL PPHLLGEAAL AALQRFLPCN NDPSSAVAAE AYSCDDEFRM YEFKVRRCPR 180 GRSHDWTECP YAHPGEKARR RDPRRFHYSG TPCPDFRRGG GCRRGDACEL AHGVFETWLH 240 PERYRTQPCK DGTACRRRVC FFAHSPMQLR VVLPPSPTSL GKDGARMTLS PTSTLAPAPM 300 SPPSDGSSPP VTPVGAHEVV KAMRKLQLSK VSSAPPFGTR RGMGFLAAFG SAPVTPGTRE 360 DEATKRREEE EAVPDLDWVS ELVKD

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MKGNETKLPP ASLFIVRFHS FYALHRSGAY TYLMNQHDKE MLEWLLVFKL VLSTSVSCDE  60
LVFFHTLTPK RRQQHKKKRR RRLPMVPGER THCDPTAHVP PWHLAEYPTA VMQQYSALPV  120
SGVAGLSCDL PPHLLGEAAL AALQRFLPCN NDPSSAVAAE AYSCDDEFRM YEFKVRRCPR  180
GRSHDWTECP YAHPGEKARR RDPRRFHYSG TPCPDFRRGG GCRRGDACEL AHGVFETWLH  240
PERYRTQPCK DGTACRRRVC FFAHSPMQLR VVLPPSPTSL GKDGARMTLS PTSTLAPAPM  300
SPPSDGSSPP VTPVGAHEVV KAMRKLQLSK VSSAPPFGTR RGMGFLAAFG SAPVTPGTRE  360
DEATKRREEE EAVPDLDWVS ELVKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	79	KRRQQHKKKR
2	70	82	KRRQQHKKKRRRR
3	71	82	RRQQHKKKRRRR
4	72	83	RRQQHKKKRRRR
5	76	81	KKKRRR
6	76	82	KKKRRRR
7	77	82	KKKRRR
8	78	83	KRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-67	C3H family protein