PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW25248.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C2H2

Protein Properties

Length: 419aa MW: 45752.5 Da PI: 9.5507

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW25248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWW25248.1 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSKE VRKKVYVCPE VTCVHHDPSR 60 ALGDLTGIKK HFSRKHGEKK WKCNKCSKKY AVMSDWKAHS KICGTREYRC DCGTLFSRRD 120 SFITHRAFCD ALADESSRVV TAKPTPATHH LHQFSHPAAS LEPFPLHQSI LQTQFPPLIR 180 TPEVSNNALS GSHELQQELS LKREQQKHFN TRSDIPPWLN HQATTSLSHL DFPCSIYSTR 240 LEQEYPPGNP GALPPPPAPL PAYQVSASSP HMSATALLQK AAQMGATISR PPQIGQMTSH 300 TTSGFGLGLS SQQNTDGGGD GRGGASFGQV SAPPPLLHDM MMNRLSSPPG FDGSFEDAFG 360 GFFRSKREGS SYMDGAVRSQ GKDGGGGAGD GGGGSGGGGN DGMTRDFLGL RAFFPQGYP

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSKE VRKKVYVCPE VTCVHHDPSR  60
ALGDLTGIKK HFSRKHGEKK WKCNKCSKKY AVMSDWKAHS KICGTREYRC DCGTLFSRRD  120
SFITHRAFCD ALADESSRVV TAKPTPATHH LHQFSHPAAS LEPFPLHQSI LQTQFPPLIR  180
TPEVSNNALS GSHELQQELS LKREQQKHFN TRSDIPPWLN HQATTSLSHL DFPCSIYSTR  240
LEQEYPPGNP GALPPPPAPL PAYQVSASSP HMSATALLQK AAQMGATISR PPQIGQMTSH  300
TTSGFGLGLS SQQNTDGGGD GRGGASFGQV SAPPPLLHDM MMNRLSSPPG FDGSFEDAFG  360
GFFRSKREGS SYMDGAVRSQ GKDGGGGAGD GGGGSGGGGN DGMTRDFLGL RAFFPQGYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	44	KLKQRSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-84	C2H2 family protein