PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW26697.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 566aa MW: 61475.7 Da PI: 5.0748

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW26697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	240	260	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RWW26697.1 240 PCPDFRK-GSCRRGDMCEYAHG 260 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MNHLTVETDD FSSSLLELAA NDDVDAFRQS LDRDPSAINE AGLWYSRRKG SKQMMLEHRT 60 PLMVAATYGS LDVLKLIVSL PSVDVNRVSG PDNATALHCA ASGGSSDAVD AVKILLAAGA 120 DPTLVDANGN LAADVIVAPP RLPDPDEEGS PSARSTSSPP TAKYPDLTVT VSEKKEYPVD 180 PTLPDIKNSI YATDEFRMFS FKIRPCSRAY SHDWTECPFA HPGENARRRD PRKYHYSCVP 240 CPDFRKGSCR RGDMCEYAHG VFESWLHPAQ YRTRICKDGT SCARRVCFFA HRDDELRPLY 300 MSTGSAVSSP RASTASVEMA AALGFMPGSP SSVSAGIRLR SSLSAREMSL DDQLVMSEFD 360 KQQLLNDLCQ SRLSSSTANH SVRTKAMNPS NLDDLFSAEI TSSPSLLSPI NTGSMEPVSP 420 LSSRLAVLSQ RERQQQTLRS LSSRDFGPIS SQILDSPTNL SWSKWASPSG APDWGVNGEE 480 LGLLRRSSSF ELRGTGDEPD LSWVHSLVRD TPPEKMVSAA MAPAGPSDLP ATGVESSNSQ 540 GEMDGHDQAV VLGAWLDNMQ LDQIIP

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MNHLTVETDD FSSSLLELAA NDDVDAFRQS LDRDPSAINE AGLWYSRRKG SKQMMLEHRT  60
PLMVAATYGS LDVLKLIVSL PSVDVNRVSG PDNATALHCA ASGGSSDAVD AVKILLAAGA  120
DPTLVDANGN LAADVIVAPP RLPDPDEEGS PSARSTSSPP TAKYPDLTVT VSEKKEYPVD  180
PTLPDIKNSI YATDEFRMFS FKIRPCSRAY SHDWTECPFA HPGENARRRD PRKYHYSCVP  240
CPDFRKGSCR RGDMCEYAHG VFESWLHPAQ YRTRICKDGT SCARRVCFFA HRDDELRPLY  300
MSTGSAVSSP RASTASVEMA AALGFMPGSP SSVSAGIRLR SSLSAREMSL DDQLVMSEFD  360
KQQLLNDLCQ SRLSSSTANH SVRTKAMNPS NLDDLFSAEI TSSPSLLSPI NTGSMEPVSP  420
LSSRLAVLSQ RERQQQTLRS LSSRDFGPIS SQILDSPTNL SWSKWASPSG APDWGVNGEE  480
LGLLRRSSSF ELRGTGDEPD LSWVHSLVRD TPPEKMVSAA MAPAGPSDLP ATGVESSNSQ  540
GEMDGHDQAV VLGAWLDNMQ LDQIIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein