PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW27025.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 411aa MW: 44949.6 Da PI: 8.229

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW27025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.3	1.5e-09	21	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +CkF+H++ RWW27025.1 21 PGEPDCAYYIRTGLCRFGMTCKFNHPQ 47 5789*********************97 PP
2	zf-CCCH	39.2	1.2e-12	68	92	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ RWW27025.1 68 QPECQYYLKTGTCKFGSTCKFHHPK 92 799********************96 PP
3	zf-CCCH	32.4	1.6e-10	114	138	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C f+ rtG+Ck+G++Ck++H++ RWW27025.1 114 EQECAFYIRTGECKFGSTCKYHHPQ 138 568********************97 PP
4	zf-CCCH	38	2.8e-12	271	297	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ RWW27025.1 271 PGQPECQFYMKTGDCKFGAVCRFHHPR 297 5789*********************96 PP
5	zf-CCCH	38.1	2.5e-12	317	343	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ RWW27025.1 317 PGEPLCVFYSRYGICKFGPNCKFDHPM 343 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MWKTNMRGSD PVESGPYPDR PGEPDCAYYI RTGLCRFGMT CKFNHPQDRM LAIAAARIRG 60 GYPERVGQPE CQYYLKTGTC KFGSTCKFHH PKEKAGIARQ AQLNILGYPL RPNEQECAFY 120 IRTGECKFGS TCKYHHPQPS NATLALRGSP IYPSAHSPTT PGQQSYSAGM TNWTLPRSSF 180 ISSPRWQASS SYAQLILPQG VVQVPGWTSY SGQLGSSPGS QRTAGGGQFY SPSQQGETNI 240 GAQGKFSSYR PGSVSMGLYA VPRENIFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL 300 IPTPNCVLSP LGLPLRPGEP LCVFYSRYGI CKFGPNCKFD HPMGTFTYGL SESSMADVPT 360 VEHLLGSTLE PPTLTLPSEE TANGSSGVSI RAPASESREA TSVDENDEAD S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MWKTNMRGSD PVESGPYPDR PGEPDCAYYI RTGLCRFGMT CKFNHPQDRM LAIAAARIRG  60
GYPERVGQPE CQYYLKTGTC KFGSTCKFHH PKEKAGIARQ AQLNILGYPL RPNEQECAFY  120
IRTGECKFGS TCKYHHPQPS NATLALRGSP IYPSAHSPTT PGQQSYSAGM TNWTLPRSSF  180
ISSPRWQASS SYAQLILPQG VVQVPGWTSY SGQLGSSPGS QRTAGGGQFY SPSQQGETNI  240
GAQGKFSSYR PGSVSMGLYA VPRENIFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL  300
IPTPNCVLSP LGLPLRPGEP LCVFYSRYGI CKFGPNCKFD HPMGTFTYGL SESSMADVPT  360
VEHLLGSTLE PPTLTLPSEE TANGSSGVSI RAPASESREA TSVDENDEAD S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-150	C3H family protein