PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW27826.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

CO-like

Protein Properties

Length: 436aa MW: 48220.9 Da PI: 5.8689

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW27826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.2	1.9e-09	23	65	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ +++ +++++C ++ +lC++C ++ H+ H++ RWW27826.1 23 ARACDGCGRRRARWYCVADDAFLCQNCDSSVHSAnplarrHNR 65 578*****************************65777777876 PP
2	CCT	66.8	6e-23	386	429	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ RWW27826.1 386 RQARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 429 99****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MSHFEKERPD AVAALSAVAG KTARACDGCG RRRARWYCVA DDAFLCQNCD SSVHSANPLA 60 RRHNRIRLKT AASSGAPDVD SDDSAPSWLR GFKRKARTPR THQHAKTASE ARTAHPTTVP 120 ELVETSLDET EDEEQQLIYC VPVFDPAFAE FRSSPPLDDS NAPSGNEAKP TMELSECTPA 180 STPTINTANR LTAFLPSDME IAEFAANMES LLGGGLDVSD GSFSMEKLGL GNSIVDSVNY 240 CMGDAGRLKT EQPDDTEGCP VELDVDMSRE TLELDFNWTG SSEAEEEEFQ DEKKVVATKQ 300 QQVTQKARLS LDYEAVIIAW SSHGSSPWTD GERPQINLDS SLFLWRSMKC NLWFLADLKG 360 MWVEGAEALG VGHGSDTGGG HVDVGRQARV TRYREKRRTR LFAKKIRYEV RKLNAEKRPR 420 MKGRFVKRTP GPAFAH

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MSHFEKERPD AVAALSAVAG KTARACDGCG RRRARWYCVA DDAFLCQNCD SSVHSANPLA  60
RRHNRIRLKT AASSGAPDVD SDDSAPSWLR GFKRKARTPR THQHAKTASE ARTAHPTTVP  120
ELVETSLDET EDEEQQLIYC VPVFDPAFAE FRSSPPLDDS NAPSGNEAKP TMELSECTPA  180
STPTINTANR LTAFLPSDME IAEFAANMES LLGGGLDVSD GSFSMEKLGL GNSIVDSVNY  240
CMGDAGRLKT EQPDDTEGCP VELDVDMSRE TLELDFNWTG SSEAEEEEFQ DEKKVVATKQ  300
QQVTQKARLS LDYEAVIIAW SSHGSSPWTD GERPQINLDS SLFLWRSMKC NLWFLADLKG  360
MWVEGAEALG VGHGSDTGGG HVDVGRQARV TRYREKRRTR LFAKKIRYEV RKLNAEKRPR  420
MKGRFVKRTP GPAFAH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	413	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-47	CO-like family protein