PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW28364.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

SBP

Protein Properties

Length: 624aa MW: 68124 Da PI: 10.2007

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW28364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	63.6	4.5e-20	72	119	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC++dl+ +k y+ rhkvC +hsk+p+v+v+g+eqrfCqqCsr RWW28364.1 72 RCQVEGCNVDLTGVKAYYCRHKVCGMHSKSPKVVVAGMEQRFCQQCSR 119 6**********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
METSASSLLS VSGAYGSSDS FHGLKFVRNG GGGGGGGSFL EASVYLAPMA TATPPRKGKG 60 VVQRGQPPPP PRCQVEGCNV DLTGVKAYYC RHKVCGMHSK SPKVVVAGME QRFCQQCSRR 120 LACHNKRRRK PPPGTLSSAF HARDVWQIGQ AGDQTPSIRY QCGLGTPSTR GVMLMQDPGT 180 EPIFSTPGTL HLAAGSDSSC ALSLLSQPWD STSKVNHQAI SSEGIPIAEP TSKNRCIDSS 240 WGFKGLEGSS SSTSFDARPR QVGQPENSHF SGELELAFLK RQCMGLDPSR RFRHFDDAIH 300 WRVSLTPSSL AGEGLSSFLV DDHSKEGVRG GYVAPPQLTT KVDKPDDVVW SLGSTPVSAQ 360 GVEIKIAFTR DGGLRSLILV FIQGMEIKIA FARDGKPDPY LYQKTRRLYR KRSAVIRAEV 420 RFVNGDEAKK LVTEEGFTIL DVRDRIQYER ARITSCCHVP LFVENQDNDF GMHPHELLEL 480 RKAGLVTIQG KISAVLGTVL ICSTVLRISL PVFALAMSPP KKERTASRNP SLVRGIGKFS 540 TSKMYHKRGI WAIKAKHGGS FPRHEPKPAS AAPAVVKPPK FYPADDVKTP IPNRRKPKPT 600 KLRYMGFDTW SSDLFVSCSV TFIA

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

METSASSLLS VSGAYGSSDS FHGLKFVRNG GGGGGGGSFL EASVYLAPMA TATPPRKGKG  60
VVQRGQPPPP PRCQVEGCNV DLTGVKAYYC RHKVCGMHSK SPKVVVAGME QRFCQQCSRR  120
LACHNKRRRK PPPGTLSSAF HARDVWQIGQ AGDQTPSIRY QCGLGTPSTR GVMLMQDPGT  180
EPIFSTPGTL HLAAGSDSSC ALSLLSQPWD STSKVNHQAI SSEGIPIAEP TSKNRCIDSS  240
WGFKGLEGSS SSTSFDARPR QVGQPENSHF SGELELAFLK RQCMGLDPSR RFRHFDDAIH  300
WRVSLTPSSL AGEGLSSFLV DDHSKEGVRG GYVAPPQLTT KVDKPDDVVW SLGSTPVSAQ  360
GVEIKIAFTR DGGLRSLILV FIQGMEIKIA FARDGKPDPY LYQKTRRLYR KRSAVIRAEV  420
RFVNGDEAKK LVTEEGFTIL DVRDRIQYER ARITSCCHVP LFVENQDNDF GMHPHELLEL  480
RKAGLVTIQG KISAVLGTVL ICSTVLRISL PVFALAMSPP KKERTASRNP SLVRGIGKFS  540
TSKMYHKRGI WAIKAKHGGS FPRHEPKPAS AAPAVVKPPK FYPADDVKTP IPNRRKPKPT  600
KLRYMGFDTW SSDLFVSCSV TFIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-27	SBP family protein