PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW28841.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 320aa MW: 34692.1 Da PI: 8.9571

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW28841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	1	18	10	27
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rtG Ck+G++Ck++H++ RWW28841.1 1 MRTGNCKFGSTCKYHHPR 18 8***************96 PP
2	zf-CCCH	31.1	4e-10	39	64	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tG+Ck+G +CkF+H++ RWW28841.1 39 GEKECAYYMKTGQCKFGFTCKFHHPQ 64 7899********************97 PP
3	zf-CCCH	37.1	5.2e-12	198	224	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG CkyG+ Ck++H+p RWW28841.1 198 PGQPECQFYMKTGDCKYGAMCKYHHPP 224 5789*********************97 PP
4	zf-CCCH	30.8	5.1e-10	247	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G Ck+G +CkF H+ RWW28841.1 247 QPCTYYMQHGLCKFGQTCKFDHP 269 69********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MRTGNCKFGS TCKYHHPRQG GGSAQPVSLN YCGYPLRPGE KECAYYMKTG QCKFGFTCKF 60 HHPQPGGTSV PSPASAFYPT VQHPSVPPPH QYPPYAGWQV ARPSVLPGSY LQGSYAPMLL 120 SPGVVPVQGW NPYSASQGPV NSSVSHAGQQ TVQPGPIYGV QNQTSSTNPA LTGAQTSTLS 180 PAGTLTASQR ENKFPERPGQ PECQFYMKTG DCKYGAMCKY HHPPDWRIPR TNIVLSALGF 240 PLRPGAQPCT YYMQHGLCKF GQTCKFDHPI STVSYSSSAS SLSDMPVAPY PIGFSVATLA 300 PSSSSSELRP EFISFQERFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-103	C3H family protein