PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW29789.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 26372.6 Da PI: 6.1737

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW29789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	29	81	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LA+ lgL rqV +WFqNrRa++k RWW29789.1 29 KKRLNIEQVRTLEKNFELGNKLEPERKMQLARALGLRPRQVAIWFQNRRARWK 81 4568889*********************************************9 PP
2	HD-ZIP_I/II	129	2e-41	27	117	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqv++LE++Fe +kLeperK++lar+Lgl+prqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+ene+L++++++L++e+ RWW29789.1 27 EKKKRLNIEQVRTLEKNFELGNKLEPERKMQLARALGLRPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKTENEALQSHNKKLQSEI 117 69**************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MSFPGVESCE EMNADDDLSD DGWQAGEKKK RLNIEQVRTL EKNFELGNKL EPERKMQLAR 60 ALGLRPRQVA IWFQNRRARW KTKQLEKDYD VLKRQFEAIK TENEALQSHN KKLQSEILAL 120 RGRETSDMIN LNKETEGSCS NRSENSSEIN LDISRTSVIE SSLPPHQILP YFPSIRPADI 180 NQLLHNSCKP EFQCAKVESE APEVSFSNLL GSMGDQAALW SWPDHHHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	4e-81	HD-ZIP family protein