PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW31500.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LSD

Protein Properties

Length: 179aa MW: 19069.3 Da PI: 8.4368

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW31500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	48.5	1.4e-15	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YPrGA++VRCa+C+t+ RWW31500.1 7 CNGCRTILLYPRGATNVRCAICNTM 31 ***********************96 PP
2	zf-LSD1	38.2	2.4e-12	52	76	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+ GA+sVRC++C t+ RWW31500.1 52 CCGCRTLLMYTSGATSVRCSCCGTI 76 99********************997 PP
3	zf-LSD1	45.5	1.2e-14	90	114	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L YP+GApsV+Ca+C++V RWW31500.1 90 CGQCHTTLIYPYGAPSVKCAVCHFV 114 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MQSQLVCNGC RTILLYPRGA TNVRCAICNT MTPTLAAGID MAQQMEMAQI ICCGCRTLLM 60 YTSGATSVRC SCCGTINIAR PANQNAYLNC GQCHTTLIYP YGAPSVKCAV CHFVTNAGTM 120 RVLIPEAQRP NETIPMRPST SAPPSEAQNM TVVVENPMSV NQSGKLVSNV VVGVTTGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-60	LSD family protein