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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWW34986.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | GATA | ||||||||
| Protein Properties | Length: 235aa MW: 25628.2 Da PI: 10.405 | ||||||||
| Description | GATA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GATA | 55.8 | 6.1e-18 | 164 | 198 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C + kTp+WR gp g+ktLCnaCG+++++ +l
RWW34986.1 164 CTHCLSQKTPQWRAGPLGPKTLCNACGVRFKSGRL 198
*******************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 235 aa Download sequence |
MDTSKNSSAA ATSLLGDYTP GEGGEDGSLE WLSIYVEDCL SSATSYTTFD PLPASAPLQT 60 PKIPKPTLES LAVQATARTK RRRRRRRRRR ITPRSLSINT CSTFHLTSSD PPLLHQAHWL 120 AESELILPKK QEEDKTPTPA LGGGGGGGGG EEKVGKEGVQ PRRCTHCLSQ KTPQWRAGPL 180 GPKTLCNACG VRFKSGRLLP EYRPAKSPTF VSYKHSNSHK KVMMMRMALL SSNPS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 78 | 87 | RTKRRRRRRR |
| 2 | 80 | 85 | KRRRRR |
| 3 | 80 | 86 | KRRRRRR |
| 4 | 80 | 88 | KRRRRRRRR |
| 5 | 80 | 91 | KRRRRRRRRRRI |
| 6 | 81 | 87 | KRRRRRR |
| 7 | 81 | 89 | KRRRRRRRR |
| 8 | 81 | 86 | RRRRRR |
| 9 | 81 | 88 | RRRRRRRR |
| 10 | 81 | 89 | RRRRRRRRR |
| 11 | 81 | 90 | RTKRRRRRRR |
| 12 | 82 | 88 | KRRRRRR |
| 13 | 82 | 90 | KRRRRRRRR |
| 14 | 82 | 87 | RRRRRR |
| 15 | 82 | 89 | RRRRRRRR |
| 16 | 82 | 90 | RRRRRRRRR |
| 17 | 82 | 91 | RTKRRRRRRR |
| 18 | 83 | 89 | KRRRRRR |
| 19 | 83 | 88 | RRRRRR |
| 20 | 83 | 90 | RRRRRRRR |
| 21 | 83 | 91 | RRRRRRRRR |
| 22 | 84 | 90 | KRRRRRR |
| 23 | 84 | 89 | RRRRRR |
| 24 | 84 | 91 | RRRRRRRR |
| 25 | 84 | 92 | RRRRRRRRR |
| 26 | 85 | 90 | RRRRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G45050.1 | 1e-35 | GATA family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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