PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr0c19g0500151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 298aa MW: 33720.3 Da PI: 9.337

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr0c19g0500151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	23	43	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H RcHm_v2.0_Chr0c19g0500151 23 CEICGKGFQRDQNLQLHRRGH 43 *******************88 PP
2	zf-C2H2	14.3	0.00012	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ RcHm_v2.0_Chr0c19g0500151 97 WKCEKCSKRYAVQSDWKAHSKTC 119 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MYPEAEVIAL SPKTLMATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRTSKEPRKR 60 VYVCPEKSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG 120 TREYKCDCGT LFSRRDSFIT HRAFCDALAE ETARVNAVSN IHNNAMPSNI NYHHYMGNNA 180 SSLLLGPPNM PQLQFSSIFK PISSNDTPDT VSQNTRGLSL WMGQGSNSTH EEMTVNNQHH 240 HHQLGSVSSS AGSIFGDPNN ISVSCSVPPP PSDHYQLNWV LEVITSFLHQ TMLIIKIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-118	C2H2 family protein