PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr0c22g0500511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 116aa    MW: 13299.9 Da    PI: 10.7821
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr0c22g0500511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27958251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +ien+  rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgkl+e+ss
  RcHm_v2.0_Chr0c22g0500511  9 KIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVVVIVFSNTGKLFEFSS 58
                               69**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MKKKMGRGKI ENTNSRQVTF SKRRAGLLKK AQELAILCDA EVVVIVFSNT GKLFEFSSAG  60
SIFLLFFNFG LSFLNFLRFM HVFLIMFTLF IIIFLLSLVE IIWGFDLNFS MSASHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-26MIKC_MADS family protein