PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0315831

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 323aa MW: 36847.2 Da PI: 7.8841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0315831	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.7e-06	167	186	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ RcHm_v2.0_Chr1g0315831 167 FSCPLCFKTFNRYNNLQMHM 186 89*****************9 PP
2	zf-C2H2	10.8	0.0015	251	273	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgks k + ++H +++ RcHm_v2.0_Chr1g0315831 251 FICKRCGKSLALKGDWRTHEKNC 273 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MTDPKNYNSS GFNNRWINFM PPHPQYYCFE STSSFNSNPY PHHQFSHNLM YNNSSCVVQS 60 QPSSSHDSHL KEALPLINKL NPRGAQLEEE EEGTSHNPTN KADVDDDVAL RIGLPSSKYS 120 IDPVSGGMEV DQSNDDELGA AASVDRLNKG HYWIPTPSQI LNGPTRFSCP LCFKTFNRYN 180 NLQMHMWGHG SQYRKGPDSL KGNKPTAMLR LPCYCCAQGC KHNIDHPRAK QLKDFRTLQA 240 HYKRKHGIRS FICKRCGKSL ALKGDWRTHE KNCGKIWHCI CGSEFKHKRS LKDHIKSFGE 300 GHGAFDIEYF EEDDEPASEI EHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-113	C2H2 family protein