PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0315931
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 332aa    MW: 37289.5 Da    PI: 6.5823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0315931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.6e-152976148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr1g0315931 29 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNSGLQRCGKSCRLRWINYL 76
                            678*******************************************97 PP
2Myb_DNA-binding47.54.1e-1582125146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+++++E+ l+++ +  lG++ W+ Ia++++ gRt++++k++w++
  RcHm_v2.0_Chr1g0315931  82 RGAFSPQEEHLIIHFHSILGNK-WSQIAARLP-GRTDNEIKNFWNS 125
                             89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MRKPELSVGK DVKANSNSKN KMMNNKLRKG LWSPEEDEKL MRYMLSNGQG CWSDIARNSG  60
LQRCGKSCRL RWINYLRPDL KRGAFSPQEE HLIIHFHSIL GNKWSQIAAR LPGRTDNEIK  120
NFWNSALKKR LKNNNISTSA SSPNESDHSS EPNVNIGGAT PFIPMHNEHD MLMSMMYMDS  180
SSSSSSASMQ VINNSTFAPN FSVLDSSSLL NYVNHTGLTQ LPEAQYGDYG NYLEAGHKMG  240
IEGDLCLPHL ETSRRSLIEK NNGQVVDNLS NNNINHFHND NNNNCFTNTA SNMSFKVDDG  300
DIFEQAEAGG SSRVGEEWDF EGFMQDISCF LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-69MYB family protein