PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0316051

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 726aa MW: 78914 Da PI: 6.1769

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0316051	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	304	324	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg RcHm_v2.0_Chr1g0316051 304 PCPEFRK-GACRRGDMCEYAHG 324 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MCGGPERSKT TSSESAETNS NPENMNHLTV ATEDSLSSSL EFASDNDVEG FKQLIDQDAS 60 SINQIGLWYS RPKGSKHIVS EQRTPLMVAA TYGSVDVVKF IVSHPEADVN FSCGLDQSTA 120 LHCAASGGSV NAMDIVKLLL SAGANPSCMD ASGHRPIDVI VVHPKLQSMR SVLEELLSKN 180 ASDGSASDCS LHLSIITSNS DSLALSSSSE NGLQSPSESV SSPASKFTEL LVNSNSEKKE 240 YPYDPSLPDI KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY 300 SCVPCPEFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV CFFAHTTEEL 360 RPLYVSTGSA VPSPRSSASG PTVMDMAAAL SLLPGSPSSV SAMSPSPFSQ SMSPSANGIS 420 QSSVAWPHPN VPTLHLPGSN LQSSRLRSSL SARDIPPENL NLLRELDAQQ QLLNELNCFS 480 QPRPSPISVG RSGRSKTLTP SNLEELFSAE FSSSPRFSDH TAASVFSPTH KSAVLNQFQQ 540 QQSMLSPINT NGMSPKNVDY PLLHAQFGVQ SPGRMSPRSV EPISPMGSRL SAFAQLENSH 600 QQLRSLSSRD LGNNFSSMVG SPVNSWSKWG SPSGRLDWSV NGEAEGRMRR SSSFELGNNG 660 EEPDLSWVQS LVKESPPEMM KDKFAAPVSS AVTSGEVLNS NSQIESIDHS VLDAWLEQMQ 720 IDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MCGGPERSKT TSSESAETNS NPENMNHLTV ATEDSLSSSL EFASDNDVEG FKQLIDQDAS  60
SINQIGLWYS RPKGSKHIVS EQRTPLMVAA TYGSVDVVKF IVSHPEADVN FSCGLDQSTA  120
LHCAASGGSV NAMDIVKLLL SAGANPSCMD ASGHRPIDVI VVHPKLQSMR SVLEELLSKN  180
ASDGSASDCS LHLSIITSNS DSLALSSSSE NGLQSPSESV SSPASKFTEL LVNSNSEKKE  240
YPYDPSLPDI KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  300
SCVPCPEFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV CFFAHTTEEL  360
RPLYVSTGSA VPSPRSSASG PTVMDMAAAL SLLPGSPSSV SAMSPSPFSQ SMSPSANGIS  420
QSSVAWPHPN VPTLHLPGSN LQSSRLRSSL SARDIPPENL NLLRELDAQQ QLLNELNCFS  480
QPRPSPISVG RSGRSKTLTP SNLEELFSAE FSSSPRFSDH TAASVFSPTH KSAVLNQFQQ  540
QQSMLSPINT NGMSPKNVDY PLLHAQFGVQ SPGRMSPRSV EPISPMGSRL SAFAQLENSH  600
QQLRSLSSRD LGNNFSSMVG SPVNSWSKWG SPSGRLDWSV NGEAEGRMRR SSSFELGNNG  660
EEPDLSWVQS LVKESPPEMM KDKFAAPVSS AVTSGEVLNS NSQIESIDHS VLDAWLEQMQ  720
IDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein