PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0316071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 127aa    MW: 14325.2 Da    PI: 4.9049
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0316071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.91.3e-4151041100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaC++lrr+C++dC++apyfp ++p++fa+vh++FGasnv ++l++lp++ r +a+++l+yeAe+r++dPvyG+vgvi++l++q+
  RcHm_v2.0_Chr1g0316071   5 RCAACRYLRRRCPSDCIFAPYFPPNNPQRFAAVHRIFGASNVGRMLQQLPPDLRAQAADTLYYEAECRVEDPVYGCVGVISRLHEQI 91 
                             6************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             ++++ ela++++ 
  RcHm_v2.0_Chr1g0316071  92 DEAECELAKTRAD 104
                             ********99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MISGRCAACR YLRRRCPSDC IFAPYFPPNN PQRFAAVHRI FGASNVGRML QQLPPDLRAQ  60
AADTLYYEAE CRVEDPVYGC VGVISRLHEQ IDEAECELAK TRADIVINSD IGQQAQVQQL  120
HDEVEDN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-42LBD family protein