PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0316121
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 332aa    MW: 36535.5 Da    PI: 9.8336
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0316121genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32162218158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  RcHm_v2.0_Chr1g0316121 162 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 218
                             69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MMPAKSKDVD PGTQTVLQST IQPWWRGAGN SLSFGESAVA SSFGEHGNRF VMNGAMQSQA  60
DAGANFKKDV QATIGSQSDG NSGHENQQMK STSSAVVAKL GEHLDANSQM ELVGHSIVLT  120
SYPYSDPQYS GMLTHYRPQA MVPPQFYGLH HGRMPLPLEM EEEPVYVNAK QYHGILRRRQ  180
SRAKAELERK LIKVRKPYLH ESRHQHALRR ARGCGGRFLN TKKQDDSDAN SSSEKTINLD  240
ANFSPKSAKS GFECFPNDSN GNFVSSNVQQ EGSGSWFRTL NNHTLSNGNG NGHVPSSTYR  300
TTFKDGKEGV FLGQQKETMQ LNGSSRGAIH SK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.15e-37NF-YA family protein