PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0316201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 180aa    MW: 20134.3 Da    PI: 10.3479
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0316201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.97.1e-33965158
               CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                            +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  RcHm_v2.0_Chr1g0316201  9 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 65
                            69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MPLPLEMEEE PVYVNAKQYH GILRRRQSRA KAELERKLIK VRKPYLHESR HQHALRRARG  60
CGGRFLNTKK QDDSDANSSS EKTINLDANF SPKSAKSGFE CFPNDSNGNF VSSNVQQEGS  120
GSWFRTLNNH TLSNGNGSGH VPSSLTYRTT FNDGKEGVFL GQQKETIQLN GSSRGAIHSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-35NF-YA family protein