PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0318281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29205 Da    PI: 6.5382
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0318281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.5e-281363151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+ien+  rqvtfskRr+g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss
  RcHm_v2.0_Chr1g0318281 13 KKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 63
                            68***********************************************96 PP
2K-box72.81e-24801764100
                   K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                             s++  +e++ +e   ++++ Lk+e+e+Lq++q +llG+dL+sLsl eLq+Le+qL ++l ++++kK++ll+eq+e+++ ke+++ +e
  RcHm_v2.0_Chr1g0318281  80 SETALVESRAEEDDPKDVDVLKDELEKLQQNQLRLLGNDLSSLSLTELQKLENQLTEGLFSVKEKKDKLLMEQLEQSRVKEQRAIHE 166
                             3333478888899999*********************************************************************** PP

                   K-box  91 nkaLrkklee 100
                             n++Lrk++ee
  RcHm_v2.0_Chr1g0318281 167 NETLRKQVEE 176
                             *******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MKKKMGRGKI EIKKIENTNS RQVTFSKRRA GLLKKAQELA ILCDAEVAVI VFSNTGKLFE  60
FSSAGMKQTI ARYSKCYESS ETALVESRAE EDDPKDVDVL KDELEKLQQN QLRLLGNDLS  120
SLSLTELQKL ENQLTEGLFS VKEKKDKLLM EQLEQSRVKE QRAIHENETL RKQVEELQRL  180
FPQADHAVPS YLDYCPVEKQ NSPVYHGAKS PDLVSNFAID NGDSDTTLQL GLPSDTYRKR  240
KAPERESHSN DSGSQLGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-88MIKC_MADS family protein