PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0318651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 246aa    MW: 28135.6 Da    PI: 9.2493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0318651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-1619941296
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                            +   l +p  f+++++g+       +l+ +sg+ W+v l  +   + +++ kGW++Fv++n L+eg ++vF +dg+s f+   ++
  RcHm_v2.0_Chr1g0318651 19 S-EKLKMPTAFVNHFNGS----ALCKLRGPSGKCWDVIL--EEENNDIFFHKGWNKFVNDNSLEEGHILVFNYDGNSWFN--ATI 94
                            3.4489999**9766655....4689*************..999999****************************99994..444 PP
2B3438.1e-141512271294
                             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             ++ +l++p   a++ g++  ++kt+ l+d+s+rsW +k+  r ++gr ++ kGW+   k n++k g ++vF++++    + ++
  RcHm_v2.0_Chr1g0318651 151 RLYQLSIPIIIAKAKGLI--SKKTIELRDPSNRSWPIKV-TRMGDGRLLMNKGWRACSKWNQIKKGHTIVFEFVKG---HVKL 227
                             44679*******999999..5679***************.5888899*************************8763...2233 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MARSVPVPAF FQVLVGDFSE KLKMPTAFVN HFNGSALCKL RGPSGKCWDV ILEEENNDIF  60
FHKGWNKFVN DNSLEEGHIL VFNYDGNSWF NATIYDNSAC EMDMEAAKTK RSTGGLDGQR  120
RDYVMPGETI IRIIEFKSEH LCFKRTMEKH RLYQLSIPII IAKAKGLISK KTIELRDPSN  180
RSWPIKVTRM GDGRLLMNKG WRACSKWNQI KKGHTIVFEF VKGHVKLHIV RDEGCEVILT  240
GPNVVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-16B3 family protein