PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0319011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 246aa    MW: 28369.8 Da    PI: 8.7627
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0319011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-1820961498
                            T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              l +p  f+++++g+       +l+ ++g+ W+vkl  + k +  ++ kGWk+Fvk+n L+egDf+vF +dg+s f   v++++
  RcHm_v2.0_Chr1g0319011 20 EKLKMPTAFVNDFNGP----ALCKLRGPNGKCWDVKL--EEKNNDLFFHKGWKKFVKDNYLEEGDFLVFNYDGNSLF--SVTIYD 96
                            3488999999888766....4689*************..99999*****************************9988..777776 PP
2B340.26e-131502271194
                             HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             +++ +l +p   a++ g+   +++t+ l+d+s+rsW v ++    +gr+++ kGW +  kan++k g +vvF++++    + ++
  RcHm_v2.0_Chr1g0319011 150 HRLYQLNIPIIIARAKGLM--SKRTIELRDPSNRSWPVAVT-PMEDGRTLMNKGWCDCYKANQIKKGNTVVFEFVKG---HVKL 227
                             4556789999999999887..4569***************4.5666779************************8763...2233 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MARSAPVPAF FQVLVGDFSE KLKMPTAFVN DFNGPALCKL RGPNGKCWDV KLEEKNNDLF  60
FHKGWKKFVK DNYLEEGDFL VFNYDGNSLF SVTIYDESAC EMDMEEAKRK RSTGGLVGQM  120
RDYVMPGETR LRIIEFKSEH LCFKRTMETH RLYQLNIPII IARAKGLMSK RTIELRDPSN  180
RSWPVAVTPM EDGRTLMNKG WCDCYKANQI KKGNTVVFEF VKGHVKLHIV RDEGYEVMLT  240
GPNIVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-20B3 family protein