PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0319941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 252aa    MW: 27157.7 Da    PI: 4.589
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0319941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-173291457
                            -SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            R+t+t++q+++L+el++    +yp++e+++e+  +l    ++++++V+ WFqN +a+ek+
  RcHm_v2.0_Chr1g0319941 32 RWTPTPDQIRILKELYYDkgVKYPTTEQIQEICLHLkqygQIEDKNVFCWFQNLKAREKQ 91
                            9***************96579*************************************97 PP
2Wus_type_Homeobox99.62.4e-322993265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++ RWtPtp+Qi+iL+ely+ +G++ P++e+iq+i  +L++yG+iedkNVf WFQN kaRe+qk+
  RcHm_v2.0_Chr1g0319941 29 SSIRWTPTPDQIRILKELYYdKGVKYPTTEQIQEICLHLKQYGQIEDKNVFCWFQNLKAREKQKK 93
                            678***************9889*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MELQTQQPTE DGGSNQAAGS SANMPFRQSS IRWTPTPDQI RILKELYYDK GVKYPTTEQI  60
QEICLHLKQY GQIEDKNVFC WFQNLKAREK QKKRLNQGVQ VPKVTSSSGV GGSIDLNFGS  120
TSSTNAGGSI DLNFGSASST GAGGSIDLNF GSWVDCSVDP YSSSPFNTNT TTTSFGTKEE  180
QTFMEQRGED HQEIETLPLF PMHGEDILGN LKTTSEGGSG YGYYSCGSGG YNGGSHISLE  240
LSLNPSGAAD LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-28WOX family protein