PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0321521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 235aa    MW: 26564.8 Da    PI: 7.1472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0321521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-1366117155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++ +hn+ Er R ++iN+ ++ Lr+l+P +   ++k+ls  +++ ++ +YI +Lq
  RcHm_v2.0_Chr1g0321521  66 KKLNHNASERDRHKKINNLYSSLRSLVPAD---HAKRLSIPDTVSRVLKYIPELQ 117
                             6789**************************...9******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MLALSPPLFS TIGWPLEDHP ISHDHNNYFS AESSLPHFPT TLQPQFDQLD HSTAINGESN  60
ISSVDKKLNH NASERDRHKK INNLYSSLRS LVPADHAKRL SIPDTVSRVL KYIPELQQQV  120
EGLIQKRDEL LSKISTQENV ILQEEKKVKS TAWRSRSSLS AVSTTRLSDG EVAIQISTIK  180
SSHNFVSRIL QSLEEDGLEI LNASSFESSR GRVFYNLHLQ VIFFSPNSHS FVYTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-56bHLH family protein