PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0323021
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 170aa    MW: 19183.7 Da    PI: 9.6994
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0323021genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.9e-17867356
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                            +R+ +t++q+++L+el+     + p+ e+ ++++ +l    +++ ++V++WFqN+Ra+ek
  RcHm_v2.0_Chr1g0323021  8 TRWLPTTDQIRILKELYDDkgVKSPTVEQVQRITLQLkwyrQIENKNVFYWFQNQRAREK 67
                            7*****************6579*************************************9 PP
2Wus_type_Homeobox91.67.3e-30770365
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            +tRW Pt++Qi+iL+ely+ +G+++P+ e++qrit +L+ y +ie+kNVfyWFQN++aRe+ k+
  RcHm_v2.0_Chr1g0323021  7 NTRWLPTTDQIRILKELYDdKGVKSPTVEQVQRITLQLKWYRQIENKNVFYWFQNQRAREKLKK 70
                            79****************999****************************************885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MHCKQCNTRW LPTTDQIRIL KELYDDKGVK SPTVEQVQRI TLQLKWYRQI ENKNVFYWFQ  60
NQRAREKLKK KNLTSDVQVP KQRSGLVGGS INLNFGSTSS ADVGGSIMEQ RGEDHQEVKT  120
LPLFPMHSED IFGNMKTTSD GGGGHGGGSY ISLELSLSCE GKAGKSFWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-27WOX family protein