PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0324311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SRS
Protein Properties Length: 305aa    MW: 32095.8 Da    PI: 8.7591
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0324311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702180.85.8e-561202663154
                  DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 
                             sg  +C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpaa+rrerq   + a +   as    +  +  +    + ++  + 
  RcHm_v2.0_Chr1g0324311 120 SGMRACKDCGNRAKKGCEYSRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAVAGGVASGGGGEGSSGSS----SVAKRPRV 202
                             57789*********************************************9998888776655443333222222....22222333 PP

                  DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              ++s++++ +l  +slP++v+++avf+c rv++v++ge+e+aYq++v+i+GhvfkG+Lyd+G+++
  RcHm_v2.0_Chr1g0324311 203 MMPSKNANANL-RQSLPDQVRVPAVFKCHRVTAVSNGEAEIAYQATVKISGHVFKGLLYDRGVDK 266
                             33444444333.456************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MLGLRDILLI APNHSSVHQQ NQPISSDHPA LPLPSSTALG VGLGIFPLLT ATPCGQNAPT  60
ADGNPDNSRF WSLRTYPELN SSKQDMLSFG NHGAAESQQV AESDDGNVNG EGGGRGGEDS  120
GMRACKDCGN RAKKGCEYSR CRTCCRGRGY DCSTHVRSTW VPAARRRERQ MGVTVAVAGG  180
VASGGGGEGS SGSSSVAKRP RVMMPSKNAN ANLRQSLPDQ VRVPAVFKCH RVTAVSNGEA  240
EIAYQATVKI SGHVFKGLLY DRGVDKKNEY PCISHMHLGS GSNQRNGDSS SPTVPPSNVC  300
VASTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.14e-55SRS family protein