PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0324491
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 143aa    MW: 16350.5 Da    PI: 10.4057
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0324491genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.78.3e-133091257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++R+t+t++q+++  el+++   r p+ae+++++  +l    +++ + V++WF N+ a+e++
  RcHm_v2.0_Chr1g0324491 30 STRWTPTTYQIRIPTELYYNkgVRSPTAEQIQRICLQLkrygKIEGKYVFYWFRNHMAQERQ 91
                            58************999997689***********************************9996 PP
2Wus_type_Homeobox89.72.9e-292993265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRWtPt+ Qi+i +ely+ +G+r+P++e+iqri  +L++yGkie+k VfyWF N+ a erqk+
  RcHm_v2.0_Chr1g0324491 29 SSTRWTPTTYQIRIPTELYYnKGVRSPTAEQIQRICLQLKRYGKIEGKYVFYWFRNHMAQERQKK 93
                            689***************8769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MEPKTLQPTE DGGSNKVAGS SANMLYRRSS TRWTPTTYQI RIPTELYYNK GVRSPTAEQI  60
QRICLQLKRY GKIEGKYVFY WFRNHMAQER QKKRFTLDVH VPMQRSGLIG NGNGTNWKPE  120
DQYINFGSFA SASASSAGVI TFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-30WOX family protein